# sources

source_id: SRC_PMC10411045
title: Pollen viabilities and gene expression profiles across Musa genomes
journal: AoB Plants
doi: 10.1093/aobpla/plad052
pmid: 37564880
pmcid: PMC10411045
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/
source_type: research_article
inclusion_tier: core
data_extraction_status: full_text_tables_extracted
license: CC BY
access_date: 2026-08-01
notes: Europe PMC JATS; 3 inline tables indexed.
authors:
Yonlada Mingmanit; Thanita Boonsrangsom; Kawee Sujipuli; Kumrop Ratanasut; Phithak Inthima; Colleen Doherty


source_id: SRC_PMC10562711
journal: Frontiers in Plant Science
doi: 10.3389/fpls.2023.1255418
pmid: 37822335
pmcid: PMC10562711
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10562711/
source_type: research_article
inclusion_tier: supporting
data_extraction_status: full_text_tables_extracted
license: CC BY
access_date: 2026-08-01
notes: Europe PMC JATS; 1 inline tables indexed.
title:
Transcriptome analysis provides insight into the regulatory mechanisms underlying pollen germination recovery at normal high ambient temperature in wild banana (Musa itinerans)

authors:
Chunyu Zhang; Chengyu Zhang; Xiaoqiong Xu; Minzhang Liao; Ning Tong; Zihao Zhang; Yukun Chen; Xu Xu Han; Yuling Lin; Zhongxiong Lai


source_id: SRC_PMC11997438
journal: Horticulture Research
doi: 10.1093/hr/uhaf044
pmid: 40236735
pmcid: PMC11997438
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/
source_type: research_article
inclusion_tier: supporting
data_extraction_status: full_text_tables_extracted
license: open_access
access_date: 2026-08-01
notes: Europe PMC JATS; 2 inline tables indexed.
title:
Shaping the future of bananas: advancing genetic trait regulation and breeding in the postgenomics era

authors:
Hongxia Miao; Jianbin Zhang; Yunke Zheng; Caihong Jia; Yulin Hu; Jingyi Wang; Jing Zhang; Peiguang Sun; Zhiqiang Jin; Yongfeng Zhou; Sijun Zheng; Wei Wang; Mathieu Rouard; Jianghui Xie; Juhua Liu


source_id: SRC_PMC12590350
title: Banana breeding by genome design
journal: Journal of Integrative Plant Biology
doi: 10.1111/jipb.70025
pmid: 40932063
pmcid: PMC12590350
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12590350/
source_type: research_article
inclusion_tier: supporting
data_extraction_status: full_text_tables_extracted
license: open_access
access_date: 2026-08-01
notes: Europe PMC JATS; 6 inline tables indexed.
authors:
Rida Arshad; Tayyaba Razzaq; Bilal Ahmad; Ting Hou; Chaochao Li; Zhongxin Jin; Wei Zhang; Zhongjie Liu; Hui‐Run Huang; Peitao Lü; Wei Wang; Xue‐Jun Ge; Yongfeng Zhou; Jianghui Xie


source_id: SRC_PMC12823240
authors: Astrid Severyns; Rony Swennen; Steven B Janssens; Nico De Storme
journal: Annals of Botany
doi: 10.1093/aob/mcaf268
pmid: 41126588
pmcid: PMC12823240
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12823240/
source_type: research_article
inclusion_tier: supporting
data_extraction_status: full_text_tables_extracted
license: open_access
access_date: 2026-08-01
notes: Europe PMC JATS; 3 inline tables indexed.
title:
Combined effects of inflorescence developmental age and environmental conditions during microgametogenesis on pollen viability, germination and size in Musa acuminata ssp.


source_id: SRC_PMC13087212
title: Going wild in banana breeding enables Fusarium-resistant hybrids with improved fruit quality
journal: Nature Communications
doi: 10.1038/s41467-026-70186-9
pmid: 41786733
pmcid: PMC13087212
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC13087212/
source_type: research_article
inclusion_tier: core
data_extraction_status: full_text_tables_extracted
license: open_access
access_date: 2026-08-01
notes: Europe PMC JATS; 2 inline tables indexed.
authors:
Xin Liu; Ning Fu; Jia Li; Tian-Wen Xiao; Shaohua Zeng; Rong Jiang; Xin-Feng Wang; Hui-Ye Zhang; Lei Wei; Lu-Yun Lu; Zheng-Feng Wang; Hai-Fei Yan; Lin-Feng Li; Mathieu Rouard; Xue-Jun Ge; Wei-Ming Li; Hui-Run Huang


source_id: SRC_PMC13149654
journal: Scientific Reports
doi: 10.1038/s41598-026-42494-z
pmid: 41865167
pmcid: PMC13149654
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC13149654/
source_type: research_article
inclusion_tier: core
data_extraction_status: full_text_tables_extracted
license: CC BY-NC-ND
access_date: 2026-08-01
notes: Europe PMC JATS; 0 inline tables indexed.
title:
Biometeorological regulation of male and female fertility traits in banana (Musa spp.) across contrasting flowering environments

authors:
Anshuman Pathak; Deepak Kumar Bairwa; Shyalli Kumari; Neeharika Kanth; Roshni Agnihotri; Mayank Rai; Asish Kumar Panda


source_id: SRC_PMC4856271
journal: PLoS ONE
doi: 10.1371/journal.pone.0154448
pmid: 27144345
pmcid: PMC4856271
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC4856271/
source_type: research_article
inclusion_tier: core
data_extraction_status: full_text_tables_extracted
license: open_access
access_date: 2026-08-01
notes: Europe PMC JATS; 5 inline tables indexed.
title:
A Genome-Wide Association Study on the Seedless Phenotype in Banana (Musa spp.) Reveals the Potential of a Selected Panel to Detect Candidate Genes in a Vegetatively Propagated Crop

authors:
Julie Sardos; Mathieu Rouard; Yann Hueber; Alberto Cenci; Katie E Hyma; Ines van den Houwe; Eva Hribova; Brigitte Courtois; Nicolas Roux; Kenneth M Olsen


source_id: SRC_PMC6370977
journal: Frontiers in Plant Science
doi: 10.3389/fpls.2019.00081
pmid: 30804965
pmcid: PMC6370977
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC6370977/
source_type: research_article
inclusion_tier: core
data_extraction_status: full_text_tables_extracted
license: CC BY
access_date: 2026-08-01
notes: Europe PMC JATS; 5 inline tables indexed.
title:
Crossbreeding East African Highland Bananas: Lessons Learnt Relevant to the Botany of the Crop After 21 Years of Genetic Enhancement

authors:
Michael Batte; Rony Swennen; Brigitte Uwimana; Violet Akech; Allan Brown; Robooni Tumuhimbise; Helena Persson Hovmalm; Mulatu Geleta; Rodomiro Ortiz


source_id: SRC_PMC7461258
journal: BMC Plant Biology
doi: 10.1186/s12870-020-02623-w
pmid: 32867686
pmcid: PMC7461258
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC7461258/
source_type: research_article
inclusion_tier: core
data_extraction_status: full_text_tables_extracted
license: CC BY
access_date: 2026-08-01
notes: Europe PMC JATS; 2 inline tables indexed.
title:
Overexpression of MaTPD1A impairs fruit and pollen development by modulating some regulators in Musa itinerans

authors:
Chunhua Hu; Ou Sheng; Tao Dong; Qiaosong Yang; Tongxin Dou; Chunyu Li; Weidi He; Huijun Gao; Ganjun Yi; Guiming Deng; Fangcheng Bi


source_id: SRC_PMC8285514
authors: Suthanthiram Backiyarani; Rajendran Sasikala; Simeon Sharmiladevi; Subbaraya Uma
journal: Scientific Reports
doi: 10.1038/s41598-021-93661-3
pmid: 34272422
pmcid: PMC8285514
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC8285514/
source_type: research_article
inclusion_tier: core
data_extraction_status: full_text_tables_extracted
license: CC BY
access_date: 2026-08-01
notes: Europe PMC JATS; 3 inline tables indexed.
title:
Decoding the molecular mechanism of parthenocarpy in Musa spp. through protein–protein interaction network


source_id: SRC_PMC8484589
journal: Scientific Reports
doi: 10.1038/s41598-021-98500-z
pmid: 34593839
pmcid: PMC8484589
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC8484589/
source_type: research_article
inclusion_tier: supporting
data_extraction_status: full_text_tables_extracted
license: CC BY
access_date: 2026-08-01
notes: Europe PMC JATS; 3 inline tables indexed.
title:
Use of timelapse photography to determine flower opening time and pattern in banana (Musa spp.) for efficient hand pollination

authors:
Allan Waniale; Rony Swennen; Settumba B. Mukasa; Arthur K. Tugume; Jerome Kubiriba; Wilberforce K. Tushemereirwe; Brigitte Uwimana; Gil Gram; Delphine Amah; Robooni Tumuhimbise


source_id: SRC_PMC9720444
title: The banana genome hub: a community database for genomics in the Musaceae
journal: Horticulture Research
doi: 10.1093/hr/uhac221
pmid: 36479579
pmcid: PMC9720444
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC9720444/
source_type: research_article
inclusion_tier: supporting
data_extraction_status: full_text_tables_extracted
license: CC BY
access_date: 2026-08-01
notes: Europe PMC JATS; 2 inline tables indexed.
authors:
Gaëtan Droc; Guillaume Martin; Valentin Guignon; Marilyne Summo; Guilhem Sempéré; Eloi Durant; Alexandre Soriano; Franc-Christophe Baurens; Alberto Cenci; Catherine Breton; Trushar Shah; Jean-Marc Aury; Xue-Jun Ge; Pat Heslop Harrison; Nabila Yahiaoui; Angélique D’Hont; Mathieu Rouard


source_id: SRC_BAYO2024
authors: Bayo SJ et al.
journal: HortScience
doi: 10.21273/HORTSCI17608-23
url: https://journals.ashs.org/view/journals/hortsci/59/5/article-p632.xml
source_type: research_article
inclusion_tier: core
data_extraction_status: full_text_tables_extracted
license: varies_by_source
access_date: 2026-08-01
notes: Manually curated during web audit.
title:
Pollen Amount and Viability in Mchare and Selected Wild (AA) Banana (Musa acuminata) Genotypes: Prospects for Breeding


source_id: SRC_MONGE2025
authors: Monge et al.
journal: Reproduction and Breeding
doi: 10.1016/j.repbre.2025.11.001
url: https://www.sciencedirect.com/science/article/pii/S266707122500050X
source_type: research_article
inclusion_tier: core
data_extraction_status: abstract_extracted
license: varies_by_source
access_date: 2026-08-01
notes: Manually curated during web audit.
title:
Determination of pollen viability and germination in banana (Musa acuminata) diploids under humid tropical conditions


source_id: SRC_WANIALE2021
authors: Waniale A; Swennen R; Mukasa SB; Tugume AK; Kubiriba J; Tushemereirwe WK; Amah D; Tumuhimbise R
journal: Agronomy
doi: 10.3390/agronomy11061085
source_type: research_article
inclusion_tier: core
data_extraction_status: full_text_tables_extracted
license: varies_by_source
access_date: 2026-08-01
notes: Manually curated during web audit.
title:
Application of pollen germination media on stigmas during pollination increases seed set in East African Highland cooking bananas (Musa spp.)

url:
https://biblio.iita.org/documents/U21ArtWanialeApplicationInthomDev.pdf-df63a21aa9c6cd32ae7c5561c480654d.pdf


source_id: SRC_WANIALE2024
authors: Waniale A; Mukasa SB; Tugume AK; Barekye A; Tumuhimbise R
journal: Horticulturae
doi: 10.3390/horticulturae10050513
url: https://www.mdpi.com/2311-7524/10/5/513
source_type: research_article
inclusion_tier: core
data_extraction_status: full_text_tables_extracted
license: varies_by_source
access_date: 2026-08-01
notes: Manually curated during web audit.
title:
Promising and Failed Breeding Techniques for Overcoming Sterility and Increasing Seed Set in Bananas (Musa spp.)


source_id: SRC_TROGNITZ2025
authors: Trognitz BR
journal: Reproduction and Breeding
doi: 10.1016/j.repbre.2024.11.001
url: https://www.sciencedirect.com/science/article/pii/S2667071224000541
source_type: research_article
inclusion_tier: core
data_extraction_status: abstract_exact_value_extracted
license: varies_by_source
access_date: 2026-08-01
notes: Manually curated during web audit.
title:
Widening the tool set for breeding superior banana cultivars: can new techniques of pollen handling and pollination help overcome the lack of recombinant seed in banana breeding?


source_id: SRC_PMC8133688
authors: Patel P et al.
journal: Plant Physiology
doi: 10.1093/plphys/kiab001
pmcid: PMC8133688
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC8133688/
source_type: research_article
inclusion_tier: core_support
data_extraction_status: full_text_metadata_reviewed
license: varies_by_source
access_date: 2026-08-01
notes: Manually curated during web audit.
title:
Reproductive phasiRNA loci and DICER-LIKE5, but not microRNA loci, diversified in monocotyledonous plants


source_id: SRC_REF0001
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Adeleke MT, Pillay M, Okoli BE.. 2004. Relationships between meiotic irregularities and fertility in diploid and triploid Musa L. Cytologia 69:387–393.


source_id: SRC_REF0002
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Ahmad F, Poerba YS, Kema GH, de Jong H.. 2021. Male meiosis and pollen morphology in diploid Indonesian wild bananas and cultivars. Nucleus 64:181–191.


source_id: SRC_REF0003
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Backiyarani S, Sasikala R, Sharmiladevi S, Uma S.. 2021. Decoding the molecular mechanism of parthenocarpy in Musa spp. through protein–protein interaction network. Scientific Reports 11:1–14.


source_id: SRC_REF0004
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Damaiyani J, Hapsari L.. 2018. Pollen viability of 19 Indonesian bananas (Musa L.) collection of Purwodadi Botanic Gardens: preliminary study for breeding. In: Proceeding International Conference on Tropical Plant Conservation and Utilization, 42–51.


source_id: SRC_REF0005
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Fortescue JA, Turner DW.. 2004. Pollen fertility in Musa: viability in cultivars grown in Southern Australia. Australian Journal of Agricultural Research 55:1085–1091.


source_id: SRC_REF0006
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Hu C, Sheng O, Dong T, Yang Q, Dou T, Li C, He W, Gao H, Yi G, Deng G, et al. 2020. Overexpression of MaTPD1A impairs fruit and pollen development by modulating some regulators in Musa itinerans. BMC Plant Biology 20:1–12.


source_id: SRC_REF0007
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Jeensae R, Suvittawat K, Boonruangrod R.. 2020. Study on floral structure and pollen morphology of eight Musa genotypes: wild species and cultivars. Songklanakarin Journal of Plant Science 7:184–195.


source_id: SRC_REF0008
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Martanti D, Poerba YS, Witjaksono H, Ahmad F.. 2022. Male flower characteristics of induced tetraploid, mixoploid, and diploid banana Musa acuminata (AA) cv. ‘Pisang Rejang’. SABRAO Journal of Breeding and Genetics 54:617–626.


source_id: SRC_REF0009
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Nyine M, Pillay M.. 2007. Banana nectar as a medium for testing pollen viability and germination in Musa. African Journal of Biotechnology 6:1175–1180.


source_id: SRC_REF0010
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Oselebe HO, Nnamani CV, Ikeh E.. 2014. Pollen diversity, viability and floral structure of some Musa genotypes. Nigerian Journal of Biotechnology 27:21–27.


source_id: SRC_REF0011
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Panda AK, Soorianathasundaram K, Vijayakumar RM.. 2019. Screening for male fertility status in selected banana genotypes. Electronic Journal of Plant Breeding 10:1309–1316.


source_id: SRC_REF0012
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Soares TL, de Souza EH, Sampaio LFS, de Carvalho Costa MAP, e Silva SDO, dos Santos-Sejero JA.. 2015. Effect of collection time on the viability of banana pollen grains. African Journal of Biotechnology 14:1207–1214.


source_id: SRC_REF0013
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Ssebuliba RN, Tenkouano A, Pillay M.. 2008. Male fertility and occurrence of 2n gametes in East African Highland bananas (Musa spp.). Euphytica 164:53–62.


source_id: SRC_REF0014
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10411045/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10411045; not treated as extracted phenotype evidence.
title:
Sukkaewmanee P. 2019. Pollen morphology of native banana cultivar (Musa acuminata Colla) in Surat Thani Province. The Journals of Gerontology. Series A, Biological Sciences and Medical Sciences 8:49–52.


source_id: SRC_REF0015
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC10562711/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC10562711; not treated as extracted phenotype evidence.
title:
Soares T. L., Souza E., Costa M.A.P. d. C., Silva S., Serejo J.A. d. S. (2014). In vivo fertilization of banana. Ciencia Rural 44, 37–42. doi: 10.1590/S0103-84782013005000146


source_id: SRC_REF0016
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
51. dos Santos SM, Santana AN, dos Santos-Serejo JA. et al. Morphoanatomy and histochemistry of septal nectarines related to female fertility in banana plants of the ‘cavendish’ subgroup. Plan Theory. 2022;11:1177.


source_id: SRC_REF0017
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
55. Sardos J, Rouard M, Hueber Y. et al. A genome-wide association study on the seedless phenotype in banana (Musa spp.) reveals the potential of a selected panel to detect candidate genes in a vegetatively propagated crop. PLoS One. 2016;11:e0154448


source_id: SRC_REF0019
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
60. Taliane LS, Everton HDS, Laecio FSS. et al. Effect of collection time on the viability of banana pollen grains. Afr J Biotechnol. 2015;14:207–2014


source_id: SRC_REF0020
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
61. Ssali RT, Pillay M, Rubaihayo P. et al. Male fertility in Musa: pollen quality in diploid banana hybrids. UJAS. 2012;13:39–45


source_id: SRC_REF0021
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
63. Backiyarani S, Sasikala R, Sharmiladevi S. et al. Decoding the molecular mechanism of parthenocarpy in Musa spp. through protein-protein interaction network. Sci Rep. 2021;11:14592.


source_id: SRC_REF0022
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
65. Dash PK, Rai R. Translating the “Banana genome” to delineate stress resistance, dwarfing, parthenocarpy and mechanisms of fruit ripening. Front Plant Sci. 2016;7:1543.


source_id: SRC_REF0023
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
112. Choudhury SR, Roy S, Nag A. et al. Characterization of an AGAMOUS-like MADS box protein, a probable constituent of flowering and fruit ripening regulatory system in banana. PLoS One. 2012;7:e44361


source_id: SRC_REF0024
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
215. Chaudhary R, Singh S, Kaur K. et al. Genome-wide identification and expression profiling of WUSCHEL-related homeobox (WOX) genes confer their roles in somatic embryogenesis, growth and abiotic stresses in banana. 3 Biotech. 2022;12:321.


source_id: SRC_REF0025
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
221. Lin W, Wu S, Wei M. Ubiquitylome analysis reveals the involvement of ubiquitination in the cold responses of banana seedling leaves. J Proteome. 2023;288:104994


source_id: SRC_REF0026
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
223. Wang J, Gan S, Zheng Y. et al. Banana somatic embryogenesis and biotechnological application. Trop Plants. 2022;1:12


source_id: SRC_REF0027
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
224. Panis B, Van Wauwe A, Swennen R. Plant regeneration through direct somatic embryogenesis from protoplasts of banana (Musa spp.). Plant Cell Rep. 1993;12:403–7


source_id: SRC_REF0028
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
225. Strosse H, Domergue R, Panis B. et al. Banana and plantain embryogenic cell suspensions. In: Vezina A, Picq C, eds. INIBAP Technical Guideline 8. The International Network for the Improvement of Banana and Plantain. INIBAP: Montpellier, France, 2003, ISBN:2-910810-63-1


source_id: SRC_REF0029
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
226. Strosse H, Schoofs H, B. Panis B.. et al. Development of embryogenic cell suspensions from shoot meristematic tissue in bananas and plantains (Musa spp.). Plant Sci. 2006;170:104–12


source_id: SRC_REF0030
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11997438/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC11997438; not treated as extracted phenotype evidence.
title:
240. Adero M, Tripathi JN, Tripathi L. Advances in somatic embryogenesis of banana. Int J Mol Sci. 2023;24:10999.


source_id: SRC_REF0031
doi: 10.1007/s13205-022-03387-w
pmid: 36276441
url: https://doi.org/10.1007/s13205-022-03387-w
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12590350; not treated as extracted phenotype evidence.
title:
Chaudhary, R. , Singh, S. , Kaur, K. , and Tiwari, S. (2022). Genome‐wide identification and expression profiling of WUSCHEL‐related homeobox (WOX) genes confer their roles in somatic embryogenesis, growth and abiotic stresses in banana. 3 Biotech. 12: 321.10.1007/s13205-022-03387-wPMC955668936276441


source_id: SRC_REF0032
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12590350/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12590350; not treated as extracted phenotype evidence.
title:
Huang, X. , Lu, X.Y. , Zhao, J.T. , Chen, J.K. , Dai, X.M. , Xiao, W. , Chen, Y.P. , Chen, Y.F. , and Huang, X.L. (2010). MaSERK1 gene expression associated with somatic embryogenic competence and disease resistance response in banana (Musa spp.). Plant Mol. Biol. Rep. 28: 306–316.


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doi: 10.1002/fes3.345
pmid: 35866053
url: https://doi.org/10.1002/fes3.345
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12590350; not treated as extracted phenotype evidence.
title:
Kallow, S. , Mertens, A. , Janssens, S.B. , Vandelook, F. , Dickie, J. , Swennen, R. , and Panis, B. (2022). Banana seed genetic resources for food security: Status, constraints, and future priorities. Food Energy Secur. 11: e345.35866053 10.1002/fes3.345PMC9285888


source_id: SRC_REF0034
doi: 10.1007/s00299-016-2067-y
pmid: 27807644
url: https://doi.org/10.1007/s00299-016-2067-y
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12590350; not treated as extracted phenotype evidence.
title:
Kumaravel, M. , Uma, S. , Backiyarani, S. , Saraswathi, M.S. , Vaganan, M.M. , Muthusamy, M. , and Sajith, K.P. (2017). Differential proteome analysis during early somatic embryogenesis in Musa spp. AAA cv. Grand Naine. Plant Cell Rep. 36: 163–178.27807644 10.1007/s00299-016-2067-y


source_id: SRC_REF0035
doi: 10.1007/BF00233316
pmid: 24193761
url: https://doi.org/10.1007/BF00233316
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12590350; not treated as extracted phenotype evidence.
title:
Sagi, L. , Remy, S. , Panis, B. , Swennen, R. , and Volckaert, G. (1994). Transient gene expression in electroporated banana (Musa spp., cv. “Bluggoe”, ABB group) protoplasts isolated from regenerable embryogenetic cell suspensions. Plant Cell Rep. 13: 262–266.24193761 10.1007/BF00233316


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doi: 10.1508/cytologia.69.387
url: https://doi.org/10.1508/cytologia.69.387
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12823240; not treated as extracted phenotype evidence.
title:
Adeleke MTV, Pillay M, Okoli BE. 2004. Relationships between meiotic irregularities and fertility in diploid and triploid Musa L. Cytologia 69: 387–393. doi: 10.1508/cytologia.69.387


source_id: SRC_REF0037
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url: https://doi.org/10.19103/AS.2019.0054.13
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12823240; not treated as extracted phenotype evidence.
title:
Amah D, Turner DW, Gibbs J, Waniale A, Gram G, Swennen R. 2021. Overcoming the fertility crisis in bananas (Musa spp.). In: Kema GHJ, Drenth A. eds. Achieving sustainable cultivation of bananas, Vol. 2. Cambridge: Burleigh Dodds, 457–470. doi: 10.19103/AS.2019.0054.13


source_id: SRC_REF0038
doi: 10.17660/ActaHortic.2013.986.20
url: https://doi.org/10.17660/ActaHortic.2013.986.20
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12823240; not treated as extracted phenotype evidence.
title:
Goigoux S, Salmon F, Bakry F. 2013. Evaluation of pollen fertility of diploid and doubled-diploid clones of Mlali and their potential use for banana breeding. Acta Horticulturae 986: 195–204. doi: 10.17660/ActaHortic.2013.986.20


source_id: SRC_REF0039
doi: 10.1186/s12870-021-03142-y
pmid: 34503446
url: https://doi.org/10.1186/s12870-021-03142-y
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12823240; not treated as extracted phenotype evidence.
title:
Kallow S, Panis B, Vu DT, et al 2021. Maximizing genetic representation in seed collections from populations of self and cross-pollinated banana wild relatives. BMC Plant Biology 21: 1–14. doi: 10.1186/s12870-021-03142-y34503446 PMC8431884


source_id: SRC_REF0040
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12823240/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12823240; not treated as extracted phenotype evidence.
title:
Krishnakumar MP, Valsalakumari PK, Aravindakshan M. 1992. Pollen production, fertility and viability in different nodes of the banana cultivars. Agricultural Research Journal of Kerala 30: 53–57.


source_id: SRC_REF0041
doi: 10.4314/acsj.v1i2.69894
url: https://doi.org/10.4314/acsj.v1i2.69894
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12823240; not treated as extracted phenotype evidence.
title:
Mukasa S, Rubaihayo P. 1993. Male fertility in Uganda banana germplasm. African Crop Science Journal 1: 87–93. doi: 10.4314/acsj.v1i2.69894


source_id: SRC_REF0042
doi: 10.5897/AJB2007.000-2157
url: https://doi.org/10.5897/AJB2007.000-2157
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12823240; not treated as extracted phenotype evidence.
title:
Nyine M, Pillay M. 2007. Banana nectar as a medium for testing pollen viability and germination in Musa. African Journal of Biotechnology 6: 1175–1180. doi: 10.5897/AJB2007.000-2157


source_id: SRC_REF0043
doi: 10.1006/anbo.1996.0367
url: https://doi.org/10.1006/anbo.1996.0367
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12823240; not treated as extracted phenotype evidence.
title:
Ortiz R . 1997. Occurrence and inheritance of 2 n pollen in Musa. Annals of Botany 79: 449–453. doi: 10.1006/anbo.1996.0367


source_id: SRC_REF0044
doi: 10.21273/HORTSCI.33.1.0146
url: https://doi.org/10.21273/HORTSCI.33.1.0146
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12823240; not treated as extracted phenotype evidence.
title:
Ortiz R, Ulburghs F, Okoro JU. 1998. Seasonal variation of apparent male fertility and 2n pollen production in plantain and banana. HortScience 33: 146–148. doi:10.21273/HORTSCI.33.1.0146


source_id: SRC_REF0045
doi: 10.21273/HORTSCI.33.5.889
url: https://doi.org/10.21273/HORTSCI.33.5.889
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12823240; not treated as extracted phenotype evidence.
title:
Tenkouano A, Crouch JH, Crouch HK, Vuylsteke D. 1998. Ploidy determination in Musa germplasm using pollen and chloroplast characteristics. HortScience 33: 889–890. doi:10.21273/HORTSCI.33.5.889


source_id: SRC_REF0046
doi: 10.3923/ajbkr.2011.554.563
url: https://doi.org/10.3923/ajbkr.2011.554.563
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC12823240; not treated as extracted phenotype evidence.
title:
Youmbi E, Fonkam NJP, Tomekpe K, Fonbah C. 2011. In vitro germination and pollen conservation of some Musa species. Asian Journal of Biotechnology 3: 554–563. doi:10.3923/ajbkr.2011.554.563


source_id: SRC_REF0047
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC13149654/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC13149654; not treated as extracted phenotype evidence.
title:
16.Bayo, S. J. et al. Pollen amount and viability in Mchare and selected wild (AA) banana (Musa acuminata) genotypes: Prospects for Breeding. HortScience 59(5), 632–638. (2024). 10.21273/HORTSCI17608-23


source_id: SRC_REF0048
doi: 10.4314/ajb.v6i10.57386
url: https://doi.org/10.4314/ajb.v6i10.57386
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC13149654; not treated as extracted phenotype evidence.
title:
42.NyineMPillayMBanana nectar as a medium for testing pollen viability and germination in MusaAfr. J. Biotechnol.20076101175118010.4314/ajb.v6i10.57386Nyine, M. & Pillay, M. Banana nectar as a medium for testing pollen viability and germination in Musa. Afr. J. Biotechnol.6 (10), 1175–1180. 10.4314/ajb.v6i10.57386 (2007).


source_id: SRC_REF0049
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC4856271/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC4856271; not treated as extracted phenotype evidence.
title:
23.Adeleke MTV, Pillay M, Okoli BE. Relationships between Meiotic Irregularities and Fertility in Diploid and Triploid Musa L. Cytologia (Tokyo). 2004;69: 387–393. 10.1508/cytologia.69.387


source_id: SRC_REF0050
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC4856271/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC4856271; not treated as extracted phenotype evidence.
title:
25.Dodds KS, Simmonds NW. Sterility and parthenocarpy in diploid hybrids of musa. Heredity. 1948;2: 101–117. 10.1038/hdy.1948.6


source_id: SRC_REF0051
doi: 10.1508/cytologia.52.451
url: https://doi.org/10.1508/cytologia.52.451
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC6370977; not treated as extracted phenotype evidence.
title:
AgarwalP. K. (1987). Cytogenetical investigations in Musaceae II. Meiotic studies in eight male sterile triploid banana varieties of India. Cytologia 52 451–454. 10.1508/cytologia.52.451


source_id: SRC_REF0053
doi: 10.1006/anbo.1997.0488
url: https://doi.org/10.1006/anbo.1997.0488
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC6370977; not treated as extracted phenotype evidence.
title:
OrtizR.CrouchJ. H. (1997). The efficiency of natural and artificial pollinators in plantain (Musa spp. AAB group) hybridization and seed production. Ann. Bot. 80 693–695. 10.1006/anbo.1997.0488


source_id: SRC_REF0054
doi: 10.1006/anbo.1995.1006
url: https://doi.org/10.1006/anbo.1995.1006
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC6370977; not treated as extracted phenotype evidence.
title:
OrtizR.VuylstekeD. (1995). Factors influencing seed set in triploid Musa spp. L and production of euploid hybrids. Ann. Bot. 75 151–155. 10.1006/anbo.1995.1006


source_id: SRC_REF0055
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC6370977/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC6370977; not treated as extracted phenotype evidence.
title:
SsebulibaR. N.RubaihayoR.TenkouanoA.MakumbiD.TalengeraD.MagamboM. (2005). Genetic diversity among East African Highland bananas for female fertility. Afr. Crop Sci. J. 13 13–26.


source_id: SRC_REF0056
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC7461258/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC7461258; not treated as extracted phenotype evidence.
title:
17.Israeli Y, Blumenfeld A. MUSA. In: Halevy AH,, editors. Handbook of flowering: Volume III. Boca Raton: CRC press; 1985. p. 390–402.


source_id: SRC_REF0058
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC7461258/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC7461258; not treated as extracted phenotype evidence.
title:
20.SoaresTLSouza EHd, Costa MAPdC, Silva SdOe, Santos-Serejo JAd: in vivo fertilization of bananaCiência Rural20144413742


source_id: SRC_REF0059
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC8285514/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC8285514; not treated as extracted phenotype evidence.
title:
31.Dodds KS, Simmond NW. Sterility and parthenocarpy in diploid hybrids of Musa. Heredity. 1948;2:101–117. doi: 10.1038/hdy.1948.6.


source_id: SRC_REF0060
doi: 10.1300/J411v16n01_05
url: https://doi.org/10.1300/J411v16n01_05
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC8484589; not treated as extracted phenotype evidence.
title:
2.SsebulibaRBiological factors affecting seed production in East African Highland BananasJ. Crop Improv.2006161–2677910.1300/J411v16n01_05


source_id: SRC_REF0061
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC8484589/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC8484589; not treated as extracted phenotype evidence.
title:
6.AmahDKemaGDrenthAOvercoming the fertility crisis in bananas (Musa spp.)Achieving Sustainable Cultivation of Bananas: Germplasm and Genetic Improvement2020Burleigh Dodds Science Publishing2027


source_id: SRC_REF0062
doi: 10.1080/00221589.1954.11513794
url: https://doi.org/10.1080/00221589.1954.11513794
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC8484589; not treated as extracted phenotype evidence.
title:
7.ShepherdKSeed fertility of the Gros Michel banana in JamaicaJ. Hortic. Sci.195429111110.1080/00221589.1954.11513794


source_id: SRC_REF0063
doi: 10.5897/AJB2015.14449
url: https://doi.org/10.5897/AJB2015.14449
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC8484589; not treated as extracted phenotype evidence.
title:
8.SoaresTLEffect of collection time on the viability of banana pollen grainsAfr. J. Biotechnol.201814141207121410.5897/AJB2015.14449


source_id: SRC_REF0065
doi: 10.1111/j.1744-7429.2002.tb00536.x
url: https://doi.org/10.1111/j.1744-7429.2002.tb00536.x
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC8484589; not treated as extracted phenotype evidence.
title:
20.LiuA-ZLizD-ZWangHOrnithophilous and Chiropterophilous pollination in Musa itinerans (Musaceae), a pioneer species in tropical rain forests of Yunnan, Southwestern ChinaBiotropica200234225426010.1111/j.1744-7429.2002.tb00536.x


source_id: SRC_REF0066
doi: 10.5897/ajar2015.10476
url: https://doi.org/10.5897/ajar2015.10476
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC8484589; not treated as extracted phenotype evidence.
title:
21.RutikangaATusiimeGNightGOcimatiWBlommeGVariation in nectar volume and sugar content in male flowers of Musa cultivars grown in Rwanda and their non-effect on the numbers of visiting key diurnal insect vectors of banana Xanthomonas wiltAfr. J. Agric. Res.201611860762310.5897/ajar2015.10476


source_id: SRC_REF0067
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC9720444/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC9720444; not treated as extracted phenotype evidence.
title:
31. Sardos J, Rouard M, Hueber Yet al. A genome-wide association study on the seedless phenotype in Banana (Musa spp.) reveals the potential of a selected panel to detect candidate genes in a Vegetatively propagated crop. PLoS One. 2016;11:e0154448.


source_id: SRC_REF0068
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC9720444/#ref-list-1
source_type: cited_relevant_reference
inclusion_tier: discovery
data_extraction_status: citation_only_needs_full_text_curation
license: unknown
access_date: 2026-08-01
notes: Relevant reference mined from PMC9720444; not treated as extracted phenotype evidence.
title:
47. Drapal M, Carvalho EB, Rouard Met al. Metabolite profiling characterises chemotypes of Musa diploids and triploids at juvenile and pre-flowering growth stages. Sci Rep. 2019;9:4657.


source_id: SRC_MGIS_CURRENT
title: Musa Germplasm Information System (MGIS) current database
authors: Alliance of Bioversity International and CIAT
journal: MGIS
url: https://www.crop-diversity.org/mgis5/home
source_type: public_database
inclusion_tier: external_catalog
data_extraction_status: current_scope_and_export_route_verified
license: provider_terms_apply
access_date: 2026-08-01
notes:
Current portal reports 7,024 ex situ accessions in 32 collections and 3,373 in situ observations across 135 countries. Records were not bulk-copied into V1.0; use accession-level export and provenance review before integration.


source_id: SRC_MUSABASE_CURRENT
title: MusaBase breeding and phenotyping database
authors: IITA and Musa breeding partners
journal: MusaBase
url: https://www.musabase.org/
source_type: breeding_database
inclusion_tier: external_catalog
data_extraction_status: current_cross_trial_and_download_capabilities_verified
license: Toronto_Agreement_and_provider_terms_apply
access_date: 2026-08-01
notes:
Supports crosses, seedlots, trials and phenotype downloads. Public prepublication records require scientific etiquette and source-specific quality review before reuse.


source_id: SRC_BGH_CURRENT
title: Banana Genome Hub current genomics and expression services
authors: CIRAD and South Green
journal: Banana Genome Hub
url: https://banana-genome-hub.southgreen.fr/
source_type: genomics_database
inclusion_tier: external_catalog
data_extraction_status: current_analysis_services_verified
license: provider_terms_apply
access_date: 2026-08-01
notes:
Current services include genome browsing, synteny, structural variation, pangenome, BLAST, orthogroups, GO enrichment and gene-expression analysis. V1.0 links the service but does not redistribute genome assemblies.


source_id: SRC_PMC11817881
authors: Rio S et al.
journal: Horticulture Research
doi: 10.1093/hr/uhae307
pmid: 39944997
pmcid: PMC11817881
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11817881/
source_type: research_article
inclusion_tier: supporting
data_extraction_status: full_text_metadata_reviewed
license: CC BY 4.0
access_date: 2026-08-01
title:
Genome-wide association for agro-morphological traits in a triploid banana population with large chromosome rearrangements

notes:
Breeding population of 2,723 triploid hybrids assessed for 24 traits over three crop cycles; retained as a high-value future genomic-selection integration source, not reproductive phenotype evidence.


source_id: SRC_PMC11304972
authors: Osorio-Guarin JA et al.
journal: G3: Genes, Genomes, Genetics
doi: 10.1093/g3journal/jkae108
pmid: 38775627
pmcid: PMC11304972
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11304972/
source_type: research_article
inclusion_tier: supporting
data_extraction_status: full_text_metadata_reviewed
license: CC BY 4.0
access_date: 2026-08-01
title:
Genome-wide association analyses using multilocus models on bananas (Musa spp.) reveal candidate genes related to morphology, fruit quality, and yield

notes:
Study of 124 accessions, 12 traits and more than 150,000 SNPs per reference genome; catalogued for future morphology-quality-yield linkage with reproductive parent selection.


# traits

trait_id: TR_PC_EFFECT
trait_name: pollen_count_change_after_total_female_flower_suppression
category: male_fertility
unit: %
definition:
Percentage change in pollen count under total female-flower suppression relative to the untreated control.


# phenotype_observations

observation_id: OBS000985
germplasm_id: MRA_G_9187_01
trait_id: TR_PG
error_type: SD
tissue: pollen
location: Embrapa, Cruz das Almas, Bahia, Brazil
context: flowers at anthesis collected at 08:00; 24/48 h dark incubation
source_id: SRC_SOARES2008
evidence_grade: B
extraction_method: publisher_full_text_table
raw_value: 81.75 +/- 4.33
notes: Approximately 300-350 pollen grains were evaluated per replication.
method:
in vitro germination on 15% sucrose, 0.01% H3BO3, 0.01% KNO3, 0.03% Ca(NO3)2.4H2O, 0.02% MgSO4.7H2O and 0.8% agar; pH 5.8


observation_id: OBS000986
germplasm_id: MRA_G_9187_01
trait_id: TR_PG
error_type: SD
tissue: pollen
location: Embrapa, Cruz das Almas, Bahia, Brazil
context: flowers at anthesis collected at 08:00; 24/48 h dark incubation
source_id: SRC_SOARES2008
evidence_grade: B
extraction_method: publisher_full_text_table
raw_value: 90.0 +/- 6.37
notes: Approximately 300-350 pollen grains were evaluated per replication.
method:
in vitro germination on 15% sucrose, 0.01% H3BO3, 0.01% KNO3, 0.03% Ca(NO3)2.4H2O, 0.02% MgSO4.7H2O and 0.8% agar; pH 7.0


observation_id: OBS000987
germplasm_id: MRA_G_9187_01
trait_id: TR_TUBE
error_type: SD
tissue: pollen tube
location: Embrapa, Cruz das Almas, Bahia, Brazil
context: 24/48 h dark incubation
source_id: SRC_SOARES2008
evidence_grade: B
extraction_method: publisher_full_text_table
raw_value: 1.91 +/- 0.6 mm
notes: Source millimetres converted to database unit micrometres.
method:
tube length after germination on 15% sucrose, 0.01% H3BO3, 0.01% KNO3, 0.03% Ca(NO3)2.4H2O, 0.02% MgSO4.7H2O and 0.8% agar; pH 5.8


observation_id: OBS000988
germplasm_id: MRA_G_9187_01
trait_id: TR_TUBE
error_type: SD
tissue: pollen tube
location: Embrapa, Cruz das Almas, Bahia, Brazil
context: 24/48 h dark incubation
source_id: SRC_SOARES2008
evidence_grade: B
extraction_method: publisher_full_text_table
raw_value: 1.79 +/- 0.4 mm
notes: Source millimetres converted to database unit micrometres.
method:
tube length after germination on 15% sucrose, 0.01% H3BO3, 0.01% KNO3, 0.03% Ca(NO3)2.4H2O, 0.02% MgSO4.7H2O and 0.8% agar; pH 7.0


# crosses

cross_id: CROSS00114
female_germplasm_id: MRA_G_NAKITEMBE
male_germplasm_id: MRA_G_ITC0249
female_label: Nakitembe
male_label: Calcutta 4
cross_type: AAA x AA
aggregation_scope: named combination; PGM; full study period
location: NARL Kawanda, Uganda (0.417 N, 32.533 E; 1,177 m)
period: 2016-01 to 2019-01
source_id: SRC_WANIALE2021
evidence_grade: B
notes:
Exact narrative total; excluded from the article's statistical analysis because seed set was extremely low.


cross_id: CROSS00117
female_germplasm_id: MRA_G_CARBAP_832
male_germplasm_id: MRA_G_PISANG_LILIN
female_label: CARBAP 832
male_label: Pisang Lilin
cross_type: 4x x 2x
aggregation_scope: named combination; T1 suppression treatment
seed_set_unit: seeds per hand (mean across hands 1-6)
location: Njombe, Cameroon
source_id: SRC_DZOYEM2023
evidence_grade: B
notes:
Mean +/- SD = 56.63 +/- 6.67; half-bunch female-flower suppression on male parent; nine crosses per treatment.


cross_id: CROSS00118
female_germplasm_id: MRA_G_CARBAP_832
male_germplasm_id: MRA_G_PISANG_LILIN
female_label: CARBAP 832
male_label: Pisang Lilin
cross_type: 4x x 2x
aggregation_scope: named combination; T2 suppression treatment
seed_set_unit: seeds per hand (mean across hands 1-6)
location: Njombe, Cameroon
source_id: SRC_DZOYEM2023
evidence_grade: B
notes:
Mean +/- SD = 66.67 +/- 5.0; total female-flower suppression on male parent; nine crosses per treatment.


cross_id: CROSS00120
female_germplasm_id: MRA_G_CARBAP_832
male_germplasm_id: MRA_G_ITC1187
female_label: CARBAP 832
male_label: Tomolo
cross_type: 4x x 2x
aggregation_scope: named combination; T1 suppression treatment
seed_set_unit: seeds per hand (mean across hands 1-6)
location: Njombe, Cameroon
source_id: SRC_DZOYEM2023
evidence_grade: B
notes:
Mean +/- SD = 2.94 +/- 1.45; half-bunch female-flower suppression on male parent; nine crosses per treatment.


cross_id: CROSS00121
female_germplasm_id: MRA_G_CARBAP_832
male_germplasm_id: MRA_G_ITC1187
female_label: CARBAP 832
male_label: Tomolo
cross_type: 4x x 2x
aggregation_scope: named combination; T2 suppression treatment
seed_set_unit: seeds per hand (mean across hands 1-6)
location: Njombe, Cameroon
source_id: SRC_DZOYEM2023
evidence_grade: B
notes:
Mean +/- SD = 6.11 +/- 1.54; total female-flower suppression on male parent; nine crosses per treatment.


# candidate_genes

gene_evidence_id: GENE0012
gene_symbol: MaZEP
gene_id_v1: GSMUA_Achr7P18880_001
trait: parthenocarpy
description: Zeaxanthin epoxidase
evidence_type: banana ovary expression + PPI network + qRT-PCR
evidence_grade: C
direction: Down regulation
source_id: SRC_PMC8285514
notes:
Pollinated and unpollinated ovaries of Calcutta 4, Pisang Lilin and Cultivar Rose; symbolic qRT-PCR values retained in source table.


gene_evidence_id: GENE0031
gene_id_other: Ma04_g08050
trait: temperature-mediated recovery of pollen germination
description: 3-deoxy-manno-octulosonate cytidylyltransferase
evidence_type: banana pollen differential expression with GO-pathway support
evidence_grade: C
direction: up
source_id: SRC_PMC10562711
notes:
28 C recovery treatment versus 23 C low-temperature control; pollen tube growth and development. Exact gene and direction reported in the main text.


gene_evidence_id: GENE0032
gene_id_other: Ma09_g07920
trait: temperature-mediated recovery of pollen germination
description: probable carboxylesterase 18
evidence_type: banana pollen differential expression with GO-pathway support
evidence_grade: C
direction: up
source_id: SRC_PMC10562711
notes:
28 C recovery treatment versus 23 C low-temperature control; pollen germination; qRT-PCR validated. Exact gene and direction reported in the main text.


gene_evidence_id: GENE0036
gene_id_other: Ma04_g30160
trait: temperature-mediated recovery of pollen germination
description: pollen tube-associated DEG
evidence_type: banana pollen differential expression with GO-pathway support
evidence_grade: C
direction: down
source_id: SRC_PMC10562711
notes:
28 C recovery treatment versus 23 C low-temperature control; six pollen tube and development GO pathways. Exact gene and direction reported in the main text.


gene_evidence_id: GENE0037
gene_symbol: CYP704B1
gene_id_other: Ma08_g18570
trait: temperature-mediated recovery of pollen germination
description: CYP704B1
evidence_type: banana pollen differential expression with GO-pathway support
evidence_grade: C
direction: down
source_id: SRC_PMC10562711
notes:
28 C recovery treatment versus 23 C low-temperature control; pollen exine, wall assembly and sporopollenin biosynthesis. Exact gene and direction reported in the main text.


gene_evidence_id: GENE0038
gene_id_other: Ma11_g21240
trait: temperature-mediated recovery of pollen germination
description: probable beta-1,4-xylosyltransferase IRX9H
evidence_type: banana pollen differential expression with GO-pathway support
evidence_grade: C
direction: down
source_id: SRC_PMC10562711
notes:
28 C recovery treatment versus 23 C low-temperature control; multiple pollen development pathways. Exact gene and direction reported in the main text.


gene_evidence_id: GENE0040
gene_id_other: Ma06_g22410
trait: temperature-mediated recovery of pollen germination
description: high mobility group B protein 9-like
evidence_type: banana pollen differential expression with GO-pathway support
evidence_grade: C
direction: down
source_id: SRC_PMC10562711
notes:
28 C recovery treatment versus 23 C low-temperature control; pollen tube, development and germination pathways. Exact gene and direction reported in the main text.


gene_evidence_id: GENE0042
gene_symbol: MYB
gene_id_other: Ma01_g01960
trait: temperature-mediated recovery of pollen germination
description: MYB transcription factor candidate
evidence_type: differentially expressed MYB with predicted pollen-germination regulatory targets
evidence_grade: E
source_id: SRC_PMC10562711
notes:
Differentially expressed MYB named in the main text; target relationship is computationally predicted and requires functional validation.


# gwas_markers

marker_id: GWAS0001
chromosome: 1
marker_name: S1_2170475
q_value: +
r_squared: 0.14
population: 104-accession panel
source_id: SRC_PMC4856271
notes:
Association significance symbols and statistics retained exactly as reported; consult the source table legend for thresholds.


# bioprojects

accession: PRJNA935075
title: RNA-seq of pollen germination recovery in wild banana (Musa itinerans)
project_data_type: Raw sequence reads
registration_date: 2023/02/15 00:00
submitter: Fujian Agriculture and Forestry University
reproductive_scope: core
tissue_or_material: pollen
treatment: low-temperature loss followed by 28 C recovery
source_url: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA935075
curation_status: verified
description:
The study selected the wild banana pollen that had lost its germination ability under low temperature stress as the control group and the wild banana pollen that had recovered its germination ability under constant temperature incubation as the treatment group for transcriptome sequencing.

notes:
Sample count is expected/reported when independently confirmed; blank means verify in SRA before analysis.


accession: PRJNA388556
title: Musa whole-flower transcriptome subset
project_data_type: Transcriptome or Gene expression
registration_date: 2017/05/31 00:00
submitter: University of California at Berkeley
reproductive_scope: core
tissue_or_material: Musa whole flower
treatment: Musa floral-development comparison
source_url: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA388556
curation_status: verified
description:
This platform indexes only the Musa whole-flower libraries linked to this public project for banana floral-development evidence.

notes:
Sample count is expected/reported when independently confirmed; blank means verify in SRA before analysis.


accession: PRJNA625703
title: Musa reproductive small-RNA subset
project_data_type: Transcriptome or Gene expression
registration_date: 2020/04/16 00:00
submitter: Meyers lab, Donald Danforth Plant Science Center
reproductive_scope: core_support
tissue_or_material: Musa flower, anther and matched Musa tissues
treatment: Musa reproductive small-RNA profiling
source_url: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA625703
curation_status: verified
description:
This platform indexes only the Musa male-flower, female-flower and anther small-RNA libraries, with matched Musa tissues retained for interpretation.


accession: PRJEB28077
title: Recombination and large structural variations shape the genomes of interspecific edible bananas.
project_data_type: Other
registration_date: 2020/08/07 00:00
submitter: Genoscope
reproductive_scope: mechanism_support
tissue_or_material: whole genome
treatment: interspecific recombination and structural variation
source_url: https://www.ncbi.nlm.nih.gov/bioproject/PRJEB28077
curation_status: verified
description:
Admixture and polyploidization are recognized as major processes of eukaryote genome evolution. However, knowledge of their impact on chromosome segregation is still limited. Many banana cultivars are triploid (sometimes diploid) interspecific hybrids between Musa acuminata (A genome) and M. balbisiana (B genome). They have no or very low fertility, are vegetatively propagated and were classified based on morphological characters as 'AB', 'AAB' or 'ABB'. We used NGS sequence data to characterize the A vs. B chromosomes composition of nine diploid and triploid interspecific cultivars, to compare chromosome structure between A and B genomes and to analyze A/B chromosome segregations in a polyploid context. We showed that interspecific recombination occurs frequently between A and B chromosomes. We identified two large structural variations between A and B genomes, a reciprocal translocation and an inversion, that locally affect recombination and lead to segregation distortions and aneuploidy in a triploid progeny. The interspecific recombination and large structural variations resulted in edible bananas having mosaic genomes. The unprecedented resolution in deciphering their genome structure, allowed us to start revisiting the origins of banana cultivars and will allow to explore breeding strategies with much more efficiency.


accession: PRJEB32153
title: Genome ancestry patterns revealed unknown contributor(s) to cultivated banana
project_data_type: Other
registration_date: 2021/04/23 00:00
submitter: Genoscope
reproductive_scope: domestication_support
tissue_or_material: whole genome
treatment: ancestry of seedless parthenocarpic cultivars
source_url: https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32153
curation_status: verified
description:
Hybridizations between closely related species are involved in the domestication process of many crops. Banana cultivars are derived from such hybridizations between species and subspecies of the genus Musa that diverged in various regions and archipelagos of tropical South-East Asia. Among the generated diploid and triploid hybrids, those with seedless parthenocarpic fruits were selected by humans and dispersed through vegetative propagation. Musa acuminata subspecies are involved in the vast majority of these cultivars.                We analyzed sequence data from 14 M. acuminata wild accessions, 10 M. acuminata-based cultivars including diploids and one triploid to characterize the ancestral contributions along their chromosomes. Using multivariate analysis and SNP clustering, we identified five ancestral groups contributing to these cultivars. Four of them corresponded to known M. acuminata subspecies. A fifth group present only in cultivars was defined based on cultivar 'Pisang Madu' and represented two uncharacterized genetic pools. The genome mosaics of cultivars were diverse and more complex than expected with at least three and up to five ancestries, implying multiple hybridization steps. Contributions from at least three known M. acuminata subspecies and from the fifth ancestral group identified here were revealed in the triploid genome of 'Cavendish', the most economically important banana cultivar. Our results highlighted the complexity of cultivated banana origins and revealed unknown ancestry contributions suggesting that important banana wild ancestors are still to be identified.


accession: PRJNA327167
title: musa AAB Plantains and Musa AAA Cavendish Raw sequence reads
project_data_type: Raw sequence reads
registration_date: 2016/06/29 00:00
submitter: Bioversity International; J. Craig Venter Institute
reproductive_scope: gwas_support
tissue_or_material: GBS genomic DNA
treatment: seedless triploid and diploid diversity panel
source_url: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA327167
curation_status: verified
description:
The most famous of the cultivars of banana are seedless triploids, as the commercially important Cavendish desert banana (AAA) and the staple African Plantains (AAB) which have importance for food security. We provide Genotyping-By-Sequencing (GBS) data for genebank accessions with diploid and triploid combinations of the A and/or B genomes including AAB plantains and AAA Cavendish.This work is a collaboration between the J. Craig Venter Institute, CIRAD and Bioversity international.


accession: PRJNA394594
title: Musa acuminate L. Transcriptome
project_data_type: Transcriptome or Gene expression
registration_date: 2017/07/16 00:00
submitter: Institute of Tropical Bioscience and Biotechnology
reproductive_scope: early_fruit_support
tissue_or_material: developmental fruit transcriptomes
treatment: ABA signaling across fruit development
source_url: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA394594
curation_status: verified
description:
Abscisic acid (ABA) signaling plays a crucial role in developmental and environmental adaptation processes of plants. In this study, PYL-PP2C-SnRK2 genes, the core components of the abscisic acid pathway, were identified from banana. Further transcriptomic analyses showed that banana PYL-PP2C-SnRK2 genes are involved in tissue development, fruit development and ripening, and response to abiotic stress in two cultivated varieties. This study provides new insights into the complicated transcriptional control of PYL-PP2C-SnRK2 genes in banana.


accession: PRJNA1224289
project_data_type: Raw sequence reads
registration_date: 2025/02/16 00:00
submitter: Guangdong Ocean University
reproductive_scope: hormone_support
tissue_or_material: fruit developmental transcriptome/metabolome
treatment: GA3 treatment
source_url: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1224289
curation_status: verified
title:
Gibberellic Acid Effects on Banana Nitrogen, Phosphorus and Potassium Accumulation and Metabolic and Transcriptomic Modulation: Implications for Sustainable Fertilizer and Growth Regulator Management

description:
Background: Bananas are mainly cultivated throughout Asia, Latin America, and Africa, notably India and China, which are the primary producers of local consumption. Banana agriculture, characterized by its high nutritional demand and monocarpic nature, often leads to soil nutrient depletion and pest susceptibility, necessitating extensive chemical inputs. Gibberellic Acid (GA3), a plant growth regulator, has been shown to influence plant growth and stress responses, but its effects on the metabolome and transcriptome of banana plants have not been fully explored. This study investigates the effects of GA3 treatment on the metabolome and transcriptome of banana plants. GA3 was applied after denavelling, both directly and via spraying, to examine its impact on nutrient accumulation, metabolic shifts, and gene expression. The variations in NPK (Nitrogen, Phosphorus, Potassium) distribution across different banana cultivars and fruit development stages were analyzed. Metabolomic and transcriptomic analyses were performed to identify changes in key metabolic pathways and gene expression profiles.Results: GA3 treatment induced significant metabolic and transcriptional changes, with applied treatments showing stronger and more distinct effects. Key metabolic pathways, including carbohydrate metabolism, secondary metabolite biosynthesis, and plant hormone signaling, thereby promoting growth and stress resilience. Notably, GA3 influenced NPK (Nitrogen, Phosphorus, Potassium) distribution, particularly in fruit, and induced changes in amino acid metabolism and stress-related pathways. Transcriptomic analysis revealed extensive differential gene expression, with notable activation of genes involved in signal transduction, carbohydrate metabolism, and secondary metabolite production.Conclusion: These findings highlight the potential of GA3 in enhancing banana growth, fruit quality, and stress resistance, providing a basis for its application in sustainable banana cultivation. Future research should explore long-term impacts, cross-hormonal interactions, and practical field applications to maximize GA3's potential in sustainable banana cultivation.


accession: PRJNA634455
title: raw sequence reads of MTA: Musa acuminata var. chinensis
project_data_type: Raw sequence reads
registration_date: 2020/05/22 00:00
submitter: Hainan University
reproductive_scope: germplasm_support
tissue_or_material: chloroplast genome
treatment: hermaphroditic self-pollinating wild accession
source_url: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA634455
curation_status: verified
description:
Musa acuminata Colla var. chinensis Hakkinen &amp; Wang Hong belongs to Musa, Musacaea, is one of the most important wild banana species native to China which has huge potential breeding value by its cold tolerance and disease resistance. It is distributed northward along the China-Myanmar border and is found in river watersheds along these slopes, at altitudes between 300 and 800 m that tolerate slight frost damage. It also can grow under shaded tree cover. It is also have basal, hermaphroditic female flowers and therefore self-pollination occurs before the floral bracts open. The information of chloroplast genomes has been extensively applied in understanding plant genetic diversity and evolution that are of great importance in breeding programs. The complete chloroplast genome of Musa acuminata Colla var. chinensis will greatly enhance precious gene resources for banana breeding programs in the future.


accession: PRJEB14647
title: Transcriptome data of the Musa acuminata genome sequencing project
project_data_type: Other
registration_date: 2016/07/01 00:00
submitter: Genoscope
reproductive_scope: early_fruit_support
tissue_or_material: fruit at 40/60/90 DAF
treatment: untreated and acetylene treated
source_url: https://www.ncbi.nlm.nih.gov/bioproject/PRJEB14647
curation_status: verified
description:
Library AQK_AOSU Cavendish banana fruits 40 days after flowering (DAF) untreated, 5 days after harvest,Library AQK_BOSU Cavendish banana fruits 60 days after flowering (DAF) untreated, 5 days after harvest,Library AQK_COSU Cavendish banana fruits 90 days after flowering (DAF) untreated, 5 days after harvest,Library AQK_DOSU Cavendish banana fruits 40 days after flowering (DAF), 4 days after a 24h acetylene treatment at 10,000 ppm,Library AQK_EOSU Cavendish banana fruits 60 days after flowering (DAF), 4 days after a 24h acetylene treatment at 10,000 ppm,Library AQK_FOSU  Cavendish fruits 90 days after flowering (DAF), 4 days after a 24h acetylene treatment at 10,000 ppm,Library AQK_GOSU Musa acuminata accession Pisang pipit leaf pieces mock inoculated,Library AQK_HOSU Musa acuminata accession DH-Pahang leaf pieces mock inoculated,Library AQK_IOSU Musa acuminata accession Pisang madu leaf pieces mock inoculated,Library AQK_KOSU Musa acuminata accession Pisang pipit leaf pieces inoculated with Mycosphaerella fijiensis strain CIRAD139A,Library AQK_LOSU Musa acuminata accession DH-Pahang leaf pieces inoculated with Mycosphaerella fijiensis strain CIRAD139A,Library AQK_MOSU Musa acuminata accession Pisang madu leaf pieces inoculated with Mycosphaerella fijiensis strain CIRAD139A,Library AQK_NOSU Cavendish banana roots inoculated with Fusarium oxysporum fsp cubense Race1 ,Library AQK_POSU Cavendish banana roots inoculated with Fusarium oxysporum fsp cubense Race4,Library AQK_QOSU Cavendish banana roots mock inoculated,Library AQK_ROSU Musa acuminata accession Pahang roots mock inoculated,Library AQK_SOSU Musa acuminata accession Pahang roots inoculated with Fusarium oxysporum fsp cubense Race4


accession: PRJNA450532
title: Genotype profiling of the global banana collection (ITC)
project_data_type: Raw sequence reads
registration_date: 2018-04-17
submitter: Bioversity International
reproductive_scope: population_genomics_support
tissue_or_material: leaf genomic DNA
treatment: RAD-seq genotype profiling of the global ITC collection
source_url: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA450532
curation_status: verified
description:
RAD-seq characterization of banana genetic resources conserved at the Bioversity International Musa Transit Center.


# omics_samples

run_accession: SRR23491617
bioproject_accession: PRJNA935075
sra_study: SRP422871
experiment_accession: SRX19385200
biosample_accession: SAMN33296278
sample_accession: SRS16780768
sample_name: CK1
organism: Musa itinerans
library_name: CK1
library_strategy: RNA-Seq
library_selection: Oligo-dT
library_source: TRANSCRIPTOMIC
library_layout: PAIRED
platform: ILLUMINA
instrument_model: Illumina NovaSeq 6000
release_date: 2023-09-20 00:19:10
biological_group: low-temperature control
tissue: pollen
treatment: fresh pollen at 23 C with lost germination ability
article_source_id: SRC_PMC10562711
source_url: https://www.ncbi.nlm.nih.gov/sra/SRR23491617
curation_status: official_sra_runinfo_article_enriched
notes:
Sequencing metrics are official NCBI RunInfo; biological group and treatment were resolved against the linked article.


run_accession: SRR11553478
bioproject_accession: PRJNA625703
sra_study: SRP256576
experiment_accession: SRX8123288
biosample_accession: SAMN14605264
sample_accession: SRS6487724
sample_name: GSM4478446
organism: Musa ABB Group
library_strategy: ncRNA-Seq
library_selection: size fractionation
library_source: TRANSCRIPTOMIC
library_layout: SINGLE
platform: ILLUMINA
instrument_model: Illumina HiSeq 2500
release_date: 2020-04-17 15:56:01
biological_group: Silver Bluggoe (ABB) male flower
tissue: male flower
treatment: male flower; cultivar Silver Bluggoe
article_source_id: SRC_PMC8133688
source_url: https://www.ncbi.nlm.nih.gov/sra/SRR11553478
curation_status: official_sra_runinfo_geo_article_enriched
notes:
Sequencing metrics are official NCBI RunInfo; tissue, genotype and cultivar were resolved against GSE148762 and the linked article.


# model_terms

model_term_id: MODEL0001
response: Percentage viable pollen
term: Intercept
p_value: 0.000312
material_group: wild accessions
source_id: SRC_PMC12823240
notes:
Environmental lag notation preserved from source; scientific p-value notation standardized to numeric form.


# intervention_evidence

intervention_id: INT0001
intervention_name: Pollen germination medium (PGM)
intervention_class: stigma conditioning
application_route: applied to stigma immediately before pollination
female_label: Enzirabahima
male_label: Calcutta 4
aggregation_scope: named female genotype; full study aggregate
seed_set_unit: seeds per 100 fruits per bunch
effect_unit: seeds per 100 fruits per bunch
outcome_class: supported increase
period: 2016-01 to 2019-01
source_id: SRC_WANIALE2021
evidence_grade: B
notes:
Exact source aggregate. The source reports a significant overall PGM benefit; genotype-specific P values were not provided.


intervention_id: INT0042
intervention_name: Pollen-anther-stigma (PAS)
intervention_class: pollen deposition technique
application_route: wilted anther pieces mechanically worked onto stigma
aggregation_scope: article abstract exact lower-bound effect
effect_unit: minimum fold increase in pollen deposition and pollen-tube growth
outcome_class: mechanistic increase; seed-set validation pending
source_id: SRC_TROGNITZ2025
evidence_grade: C
notes:
Abstract reports at least ten-fold higher pollen deposition and pollen-tube growth than standard hand pollination.


# analysis_results

analysis_id: AN0017
domain: trait_coupling
title: Cross-environment trait coupling
outcome: pollen_count_per_anther vs pollen_viability
comparison: genotype-phase means
effect_unit: Spearman rho
method: Spearman rank correlation
evidence_grade: B
source_ids: SRC_PMC13149654
generated_at: 2026-08-01
interpretation:
Positive values indicate coordinated performance; negative values indicate a trade-off across genotype-phase combinations.


analysis_id: AN0024
domain: breeding_decision
title: Robust pollen donors across four flowering phases
outcome: pollen_germination
comparison: ranked by worst-phase mean
effect_unit: % top donor minimum
method: Minimum-performance ranking across four phases
evidence_grade: B
source_ids: SRC_PMC13149654
generated_at: 2026-08-01
interpretation:
The top five by worst-phase germination were Hatidat (31.4%), Rose (30.6%), Namarai (30.1%), Calcutta 4 (22.9%), Pisang Lilin (21.1%).


analysis_id: AN0035
domain: assay_bias
title: Tetraploid pollen viability assay discrepancy
outcome: pollen_viability
comparison: Acetocarmine - TTC
effect_unit: percentage points
method: Paired Wilcoxon signed-rank test with bootstrap CI
evidence_grade: B
source_ids: SRC_SOARES2016
generated_at: 2026-08-01
interpretation:
Acetocarmine systematically exceeded the metabolic TTC assay, so assay types should not be pooled without adjustment.


analysis_id: AN0036
domain: intervention
title: PGM consistency across female genotypes
outcome: seed_set
comparison: PGM relative improvement
effect_unit: % median improvement
method: Exact genotype-level source aggregates
evidence_grade: B
source_ids: SRC_WANIALE2021
generated_at: 2026-08-01
interpretation:
PGM increased seed set in all three named female genotypes, but the magnitude was genotype-dependent.


analysis_id: AN0037
domain: intervention
title: B-Nine: source-level intervention contrast
outcome: seed_set
comparison: treated - matched control
effect_unit: seeds per 100 fruits per bunch
method: Source-reported paired t-test
evidence_grade: B
source_ids: SRC_WANIALE2024
generated_at: 2026-08-01
interpretation:
Outcome classification: inconclusive. The experiment is small and heterogeneous across genotypes/doses.


analysis_id: AN0038
domain: intervention
title: ABA: source-level intervention contrast
outcome: seed_set
comparison: treated - matched control
effect_unit: seeds per 100 fruits per bunch
method: Source-reported paired t-test
evidence_grade: B
source_ids: SRC_WANIALE2024
generated_at: 2026-08-01
interpretation:
Outcome classification: no supported benefit. The experiment is small and heterogeneous across genotypes/doses.


analysis_id: AN0040
domain: intervention
title: Thiourea: source-level intervention contrast
outcome: seed_set
comparison: treated - matched control
effect_unit: seeds per 100 fruits per bunch
method: Source-reported paired t-test
evidence_grade: B
source_ids: SRC_WANIALE2024
generated_at: 2026-08-01
interpretation:
Outcome classification: no seed in either arm. The experiment is small and heterogeneous across genotypes/doses.


analysis_id: AN0046
domain: gene_prioritization
title: Exact-locus cross-study convergence
outcome: seedlessness and parthenocarpy
comparison: DH Pahang v1 locus observed in multiple evidence rows
effect_unit: convergent loci
method: Exact gene-ID grouping with evidence-tier audit
evidence_grade: B/C
source_ids: SRC_PMC4856271; SRC_PMC8285514
generated_at: 2026-08-01
interpretation:
Convergent loci form a shorter experimental list, but the second study partly builds on prior candidate knowledge and is not independent validation.


analysis_id: AN0047
domain: gene_prioritization
title: Temperature-recovery pollen module
outcome: pollen_germination
comparison: 28 C recovery versus 23 C low-temperature control
effect_unit: curated gene rows
method: Main-text exact-gene curation with evidence grading
evidence_grade: C/E
source_ids: SRC_PMC10562711
generated_at: 2026-08-01
interpretation:
The module links pollen-wall remodeling, nucleotide-sugar biology and MYB regulation; predicted MYB edges remain grade E.


analysis_id: AN0048
domain: gene_prioritization
title: Direct banana sterility regulator
outcome: male sterility and seedless fruit
comparison: MaTPD1A overexpression
effect_unit: direct transformation study
method: Stable banana overexpression phenotype
evidence_grade: A
source_ids: SRC_PMC7461258
generated_at: 2026-08-01
interpretation:
MaTPD1A is the strongest direct functional anchor in the current evidence atlas; downstream network genes require separate validation.


analysis_id: AN0049
domain: breeding_decision
title: Historical female-parent pollination success
outcome: pollination_success
comparison: highest source-reported accession aggregate
effect_unit: %
method: Ranked historical breeding-program aggregate
evidence_grade: B
source_ids: SRC_PMC6370977
generated_at: 2026-08-01
interpretation:
Historical success identifies female-parent opportunities, but breeding-program period and cross composition confound direct genetic ranking.


# gene_convergence

convergence_id: CONV001
gene_key: GSMUA_Achr1P02650_001
gene_symbols: MaEXPA1
evidence_types: banana GWAS candidate region; banana ovary expression + PPI network + qRT-PCR
source_ids: SRC_PMC4856271; SRC_PMC8285514
highest_grade: B
interpretation:
GWAS-region and ovary expression/network evidence align at the same DH Pahang v1 locus; this is prioritization, not independent functional proof.


# evidence_scale

grade: C
definition:
Banana differential expression, PPI, qRT-PCR, narrative exact value or abstract-level quantitative evidence.


# research_datasets

dataset_id: DS001
file_name: Table_S11_duplicate_retention_tests.csv
data_format: CSV
domain: duplicate_architecture
title: Table S11 duplicate retention tests
sha256: 99dff8b6efa20bb6c37b4405f23566a04a3f0b3dbed47c0451f08124941bd227
source_data_role: analysis_ready_derived_table
evidence_grade: B
limitation: Syntenic pairs do not identify named WGD events, A/B subgenomes or allelic relationships.
key_message:
The rRNA-biogenesis capacity branch is depleted for proximal duplicates relative to matched backgrounds.


dataset_id: DS009
file_name: Table_S14_triploid_family_outcomes.tsv
data_format: TSV
domain: structural_dispersion
title: Table S14 triploid family outcomes
sha256: 2a673bdec471f3f37632832c66bed2045d4e856801ab3f7d1dfe94bcceb79ec0
source_data_role: analysis_ready_derived_table
evidence_grade: B
key_message: Supports reproduction of the corresponding analysis and preserves field-level evidence provenance.
limitation:
Families lack complete offspring-level structural haplotypes; associations do not identify a meiotic mechanism.


dataset_id: DS022
file_name: Table_S19_family_allocation.csv
data_format: CSV
domain: external_breeding_validation
title: Table S19 family allocation
sha256: 24cffef56262f2f0eb3584ecef618b405db0f79ca1933e795440dffcb0bbac5f
source_data_role: analysis_ready_derived_table
evidence_grade: B
limitation: Later-cycle phenotypes are not formal advancement labels; external performance bounds deployment.
key_message:
Family size can raise absolute capture without automatically improving elite yield per evaluated offspring.


dataset_id: DS023
file_name: Table_S19_individual_metrics.csv
data_format: CSV
domain: external_breeding_validation
title: Table S19 individual metrics
sha256: 6ccb7798ea50658bacb2dfc86923c2fe59f3d29a8144f5e83d374e157a31e518
source_data_role: analysis_ready_derived_table
evidence_grade: B
limitation: Later-cycle phenotypes are not formal advancement labels; external performance bounds deployment.
key_message:
The stage-aware model improves ranking in unseen CIRAD families but not over yield alone in Sendusu.


dataset_id: DS030
file_name: Table_S20_multisite_cycle2_bootstrap_ci.csv
data_format: CSV
domain: multisite_transferability
title: Table S20 multi-site cycle2 bootstrap ci
sha256: c9648dba7bd488fedbd1155041cb9e148a24f35f42c2ebe2b7cd644b5d1ea541
source_data_role: analysis_ready_derived_table
evidence_grade: B
key_message: Supports reproduction of the corresponding analysis and preserves field-level evidence provenance.
limitation:
Only four validation cohorts are available; Arusha and NM are small, and repeatability relations are exploratory.


dataset_id: DS031
file_name: Table_S20_multisite_cycle2_metrics.csv
data_format: CSV
domain: multisite_transferability
title: Table S20 multi-site cycle2 metrics
sha256: 2cfd3b29e2339cd05acb4204d8e40d15dab4405e3ba51b916c02965fd7339eb3
source_data_role: analysis_ready_derived_table
evidence_grade: B
key_message:
The frozen model improves directionally in CIRAD and Arusha but not in Sendusu or the small NM cohort.

limitation:
Only four validation cohorts are available; Arusha and NM are small, and repeatability relations are exploratory.


dataset_id: DS037
file_name: Table_S20_multisite_transfer_diagnostics.csv
data_format: CSV
domain: multisite_transferability
title: Table S20 multi-site transfer diagnostics
sha256: 5f49839d8108e1dd66dda98c2dd0f9b0135d7d6d4645939e895d9eeb653fac50
source_data_role: analysis_ready_derived_table
evidence_grade: B
key_message:
Maturity repeatability and stage-model benefit are rank-concordant across four cohorts, but exact inference is inconclusive.


dataset_id: DS038
file_name: Table_S21_narita_advancement_funnel.csv
data_format: CSV
domain: historical_advancement
title: Table S21 narita advancement funnel
sha256: 3f4bd4392da2b2aeebda8fd5cc796b1a92fc265fa1a92f23fadd2337b56566a2
source_data_role: analysis_ready_derived_table
evidence_grade: B
key_message:
Approximately 12,000 early evaluations yielded 27 advanced regional hybrids and one official release.

limitation:
Formal advancement can be linked only to maternal parents or cross aggregates; rejected hybrid-level predictors are absent.


dataset_id: DS039
file_name: Table_S21_narita_advancement_linkage_audit.csv
data_format: CSV
domain: historical_advancement
title: Table S21 narita advancement linkage audit
sha256: 860e756c1c56835e17dedb26a790a67aa9995f3cca31817b7e64b911c7a90d7a
source_data_role: analysis_ready_derived_table
evidence_grade: B
key_message:
Twenty-four named advanced NARITA hybrids link to 17 public cross combinations; rejected hybrid-level predictors remain unavailable.

limitation:
Formal advancement can be linked only to maternal parents or cross aggregates; rejected hybrid-level predictors are absent.


# research_records

record_id: DS001_R00001
dataset_id: DS001
record_json:
{"threshold":"relaxed_40id_60cov","gene_set":"All robust axis","metric":"has_close_paralog","tested_axis_genes":"196","observed_proportion":"0.673469387755102","matched_null_mean":"0.8103744897959183","matched_null_q025":"0.7551020408163265","matched_null_q975":"0.8622448979591837","empirical_upper_p":"1.0","empirical_lower_p":"9.999000099990002e-05","empirical_two_sided_p":"0.00019998000199980003","q_global":"0.0008570571514277144"}

search_text:
relaxed_40id_60cov | All robust axis | has_close_paralog | 196 | 0.673469387755102 | 0.8103744897959183 | 0.7551020408163265 | 0.8622448979591837 | 1.0 | 9.999000099990002e-05 | 0.00019998000199980003 | 0.0008570571514277144


record_id: DS001_R00002
dataset_id: DS001
record_json:
{"threshold":"relaxed_40id_60cov","gene_set":"All robust axis","metric":"in_reciprocal_closest_pair","tested_axis_genes":"196","observed_proportion":"0.4846938775510204","matched_null_mean":"0.5891607142857143","matched_null_q025":"0.5204081632653061","matched_null_q975":"0.6581632653061225","empirical_upper_p":"0.999000099990001","empirical_lower_p":"0.0014998500149985001","empirical_two_sided_p":"0.0029997000299970002","q_global":"0.008999100089991002"}

search_text:
relaxed_40id_60cov | All robust axis | in_reciprocal_closest_pair | 196 | 0.4846938775510204 | 0.5891607142857143 | 0.5204081632653061 | 0.6581632653061225 | 0.999000099990001 | 0.0014998500149985001 | 0.0029997000299970002 | 0.008999100089991002


record_id: DS001_R00003
dataset_id: DS001
record_json:
{"threshold":"relaxed_40id_60cov","gene_set":"High recurrence core","metric":"has_close_paralog","tested_axis_genes":"39","observed_proportion":"0.6923076923076923","matched_null_mean":"0.7922897435897437","matched_null_q025":"0.6666666666666666","matched_null_q975":"0.8974358974358975","empirical_upper_p":"0.9574042595740426","empirical_lower_p":"0.0866913308669133","empirical_two_sided_p":"0.1733826617338266","q_global":"0.37153427514391413"}

search_text:
relaxed_40id_60cov | High recurrence core | has_close_paralog | 39 | 0.6923076923076923 | 0.7922897435897437 | 0.6666666666666666 | 0.8974358974358975 | 0.9574042595740426 | 0.0866913308669133 | 0.1733826617338266 | 0.37153427514391413


record_id: DS001_R00004
dataset_id: DS001
record_json:
{"threshold":"relaxed_40id_60cov","gene_set":"High recurrence core","metric":"in_reciprocal_closest_pair","tested_axis_genes":"39","observed_proportion":"0.5897435897435898","matched_null_mean":"0.5884333333333333","matched_null_q025":"0.4358974358974359","matched_null_q975":"0.7435897435897436","empirical_upper_p":"0.563043695630437","empirical_lower_p":"0.5708429157084292","empirical_two_sided_p":"1.0","q_global":"1.0"}

search_text:
relaxed_40id_60cov | High recurrence core | in_reciprocal_closest_pair | 39 | 0.5897435897435898 | 0.5884333333333333 | 0.4358974358974359 | 0.7435897435897436 | 0.563043695630437 | 0.5708429157084292 | 1.0 | 1.0


record_id: DS001_R00005
dataset_id: DS001
record_json:
{"threshold":"relaxed_40id_60cov","gene_set":"Cell cycle and microtubules","metric":"has_close_paralog","tested_axis_genes":"52","observed_proportion":"0.8076923076923077","matched_null_mean":"0.8137307692307694","matched_null_q025":"0.7115384615384616","matched_null_q975":"0.9038461538461539","empirical_upper_p":"0.6302369763023697","empirical_lower_p":"0.5061493850614939","empirical_two_sided_p":"1.0","q_global":"1.0"}

search_text:
relaxed_40id_60cov | Cell cycle and microtubules | has_close_paralog | 52 | 0.8076923076923077 | 0.8137307692307694 | 0.7115384615384616 | 0.9038461538461539 | 0.6302369763023697 | 0.5061493850614939 | 1.0 | 1.0


record_id: DS001_R00006
dataset_id: DS001
record_json:
{"threshold":"relaxed_40id_60cov","gene_set":"Cell cycle and microtubules","metric":"in_reciprocal_closest_pair","tested_axis_genes":"52","observed_proportion":"0.6153846153846154","matched_null_mean":"0.6026826923076923","matched_null_q025":"0.46153846153846156","matched_null_q975":"0.7307692307692307","empirical_upper_p":"0.49085091490850913","empirical_lower_p":"0.6234376562343765","empirical_two_sided_p":"0.9817018298170183","q_global":"1.0"}

search_text:
relaxed_40id_60cov | Cell cycle and microtubules | in_reciprocal_closest_pair | 52 | 0.6153846153846154 | 0.6026826923076923 | 0.46153846153846156 | 0.7307692307692307 | 0.49085091490850913 | 0.6234376562343765 | 0.9817018298170183 | 1.0


record_id: DS001_R00007
dataset_id: DS001
record_json:
{"threshold":"relaxed_40id_60cov","gene_set":"RNA and ribosome biogenesis","metric":"has_close_paralog","tested_axis_genes":"102","observed_proportion":"0.5","matched_null_mean":"0.7889313725490197","matched_null_q025":"0.7058823529411765","matched_null_q975":"0.8627450980392157","empirical_upper_p":"1.0","empirical_lower_p":"9.999000099990002e-05","empirical_two_sided_p":"0.00019998000199980003","q_global":"0.0008570571514277144"}

search_text:
relaxed_40id_60cov | RNA and ribosome biogenesis | has_close_paralog | 102 | 0.5 | 0.7889313725490197 | 0.7058823529411765 | 0.8627450980392157 | 1.0 | 9.999000099990002e-05 | 0.00019998000199980003 | 0.0008570571514277144


record_id: DS001_R00008
dataset_id: DS001
record_json:
{"threshold":"relaxed_40id_60cov","gene_set":"RNA and ribosome biogenesis","metric":"in_reciprocal_closest_pair","tested_axis_genes":"102","observed_proportion":"0.37254901960784315","matched_null_mean":"0.5715578431372549","matched_null_q025":"0.4803921568627451","matched_null_q975":"0.6666666666666666","empirical_upper_p":"1.0","empirical_lower_p":"9.999000099990002e-05","empirical_two_sided_p":"0.00019998000199980003","q_global":"0.0008570571514277144"}

search_text:
relaxed_40id_60cov | RNA and ribosome biogenesis | in_reciprocal_closest_pair | 102 | 0.37254901960784315 | 0.5715578431372549 | 0.4803921568627451 | 0.6666666666666666 | 1.0 | 9.999000099990002e-05 | 0.00019998000199980003 | 0.0008570571514277144


record_id: DS001_R00009
dataset_id: DS001
record_json:
{"threshold":"relaxed_40id_60cov","gene_set":"Lipid-ethylene metabolism","metric":"has_close_paralog","tested_axis_genes":"42","observed_proportion":"0.9285714285714286","matched_null_mean":"0.8532523809523811","matched_null_q025":"0.7380952380952381","matched_null_q975":"0.9523809523809523","empirical_upper_p":"0.10638936106389361","empirical_lower_p":"0.9625037496250375","empirical_two_sided_p":"0.21277872212778723","q_global":"0.42555744425557446"}

search_text:
relaxed_40id_60cov | Lipid-ethylene metabolism | has_close_paralog | 42 | 0.9285714285714286 | 0.8532523809523811 | 0.7380952380952381 | 0.9523809523809523 | 0.10638936106389361 | 0.9625037496250375 | 0.21277872212778723 | 0.42555744425557446


record_id: DS001_R00010
dataset_id: DS001
record_json:
{"threshold":"relaxed_40id_60cov","gene_set":"Lipid-ethylene metabolism","metric":"in_reciprocal_closest_pair","tested_axis_genes":"42","observed_proportion":"0.5952380952380952","matched_null_mean":"0.6156309523809523","matched_null_q025":"0.47619047619047616","matched_null_q975":"0.7619047619047619","empirical_upper_p":"0.6723327667233276","empirical_lower_p":"0.4537546245375462","empirical_two_sided_p":"0.9075092490750925","q_global":"1.0"}

search_text:
relaxed_40id_60cov | Lipid-ethylene metabolism | in_reciprocal_closest_pair | 42 | 0.5952380952380952 | 0.6156309523809523 | 0.47619047619047616 | 0.7619047619047619 | 0.6723327667233276 | 0.4537546245375462 | 0.9075092490750925 | 1.0


record_id: DS001_R00011
dataset_id: DS001
record_json:
{"threshold":"primary_50id_70cov","gene_set":"All robust axis","metric":"has_close_paralog","tested_axis_genes":"196","observed_proportion":"0.6224489795918368","matched_null_mean":"0.7579551020408164","matched_null_q025":"0.6989795918367347","matched_null_q975":"0.8163265306122449","empirical_upper_p":"1.0","empirical_lower_p":"9.999000099990002e-05","empirical_two_sided_p":"0.00019998000199980003","q_global":"0.0008570571514277144"}

search_text:
primary_50id_70cov | All robust axis | has_close_paralog | 196 | 0.6224489795918368 | 0.7579551020408164 | 0.6989795918367347 | 0.8163265306122449 | 1.0 | 9.999000099990002e-05 | 0.00019998000199980003 | 0.0008570571514277144


record_id: DS001_R00012
dataset_id: DS001
record_json:
{"threshold":"primary_50id_70cov","gene_set":"All robust axis","metric":"in_reciprocal_closest_pair","tested_axis_genes":"196","observed_proportion":"0.45918367346938777","matched_null_mean":"0.5685464285714287","matched_null_q025":"0.5","matched_null_q975":"0.6377551020408163","empirical_upper_p":"0.9995000499950005","empirical_lower_p":"0.000999900009999","empirical_two_sided_p":"0.001999800019998","q_global":"0.0066660000666600005"}

search_text:
primary_50id_70cov | All robust axis | in_reciprocal_closest_pair | 196 | 0.45918367346938777 | 0.5685464285714287 | 0.5 | 0.6377551020408163 | 0.9995000499950005 | 0.000999900009999 | 0.001999800019998 | 0.0066660000666600005


record_id: DS001_R00013
dataset_id: DS001
record_json:
{"threshold":"primary_50id_70cov","gene_set":"High recurrence core","metric":"has_close_paralog","tested_axis_genes":"39","observed_proportion":"0.6666666666666666","matched_null_mean":"0.7447769230769231","matched_null_q025":"0.6153846153846154","matched_null_q975":"0.8717948717948718","empirical_upper_p":"0.904009599040096","empirical_lower_p":"0.17198280171982802","empirical_two_sided_p":"0.34396560343965604","q_global":"0.6069981237170401"}

search_text:
primary_50id_70cov | High recurrence core | has_close_paralog | 39 | 0.6666666666666666 | 0.7447769230769231 | 0.6153846153846154 | 0.8717948717948718 | 0.904009599040096 | 0.17198280171982802 | 0.34396560343965604 | 0.6069981237170401


record_id: DS001_R00014
dataset_id: DS001
record_json:
{"threshold":"primary_50id_70cov","gene_set":"High recurrence core","metric":"in_reciprocal_closest_pair","tested_axis_genes":"39","observed_proportion":"0.5641025641025641","matched_null_mean":"0.5674794871794872","matched_null_q025":"0.41025641025641024","matched_null_q975":"0.717948717948718","empirical_upper_p":"0.577942205779422","empirical_lower_p":"0.547045295470453","empirical_two_sided_p":"1.0","q_global":"1.0"}

search_text:
primary_50id_70cov | High recurrence core | in_reciprocal_closest_pair | 39 | 0.5641025641025641 | 0.5674794871794872 | 0.41025641025641024 | 0.717948717948718 | 0.577942205779422 | 0.547045295470453 | 1.0 | 1.0


record_id: DS001_R00015
dataset_id: DS001
record_json:
{"threshold":"primary_50id_70cov","gene_set":"Cell cycle and microtubules","metric":"has_close_paralog","tested_axis_genes":"52","observed_proportion":"0.75","matched_null_mean":"0.764375","matched_null_q025":"0.6538461538461539","matched_null_q975":"0.8653846153846154","empirical_upper_p":"0.668033196680332","empirical_lower_p":"0.45855414458554145","empirical_two_sided_p":"0.9171082891710829","q_global":"1.0"}

search_text:
primary_50id_70cov | Cell cycle and microtubules | has_close_paralog | 52 | 0.75 | 0.764375 | 0.6538461538461539 | 0.8653846153846154 | 0.668033196680332 | 0.45855414458554145 | 0.9171082891710829 | 1.0


record_id: DS001_R00016
dataset_id: DS001
record_json:
{"threshold":"primary_50id_70cov","gene_set":"Cell cycle and microtubules","metric":"in_reciprocal_closest_pair","tested_axis_genes":"52","observed_proportion":"0.5961538461538461","matched_null_mean":"0.5819653846153846","matched_null_q025":"0.4423076923076923","matched_null_q975":"0.7115384615384616","empirical_upper_p":"0.47785221477852213","empirical_lower_p":"0.6303369663033697","empirical_two_sided_p":"0.9557044295570443","q_global":"1.0"}

search_text:
primary_50id_70cov | Cell cycle and microtubules | in_reciprocal_closest_pair | 52 | 0.5961538461538461 | 0.5819653846153846 | 0.4423076923076923 | 0.7115384615384616 | 0.47785221477852213 | 0.6303369663033697 | 0.9557044295570443 | 1.0


record_id: DS001_R00017
dataset_id: DS001
record_json:
{"threshold":"primary_50id_70cov","gene_set":"RNA and ribosome biogenesis","metric":"has_close_paralog","tested_axis_genes":"102","observed_proportion":"0.45098039215686275","matched_null_mean":"0.7344019607843136","matched_null_q025":"0.6470588235294118","matched_null_q975":"0.8137254901960784","empirical_upper_p":"1.0","empirical_lower_p":"9.999000099990002e-05","empirical_two_sided_p":"0.00019998000199980003","q_global":"0.0008570571514277144"}

search_text:
primary_50id_70cov | RNA and ribosome biogenesis | has_close_paralog | 102 | 0.45098039215686275 | 0.7344019607843136 | 0.6470588235294118 | 0.8137254901960784 | 1.0 | 9.999000099990002e-05 | 0.00019998000199980003 | 0.0008570571514277144


record_id: DS001_R00018
dataset_id: DS001
record_json:
{"threshold":"primary_50id_70cov","gene_set":"RNA and ribosome biogenesis","metric":"in_reciprocal_closest_pair","tested_axis_genes":"102","observed_proportion":"0.3333333333333333","matched_null_mean":"0.5473333333333332","matched_null_q025":"0.45098039215686275","matched_null_q975":"0.6470588235294118","empirical_upper_p":"1.0","empirical_lower_p":"9.999000099990002e-05","empirical_two_sided_p":"0.00019998000199980003","q_global":"0.0008570571514277144"}

search_text:
primary_50id_70cov | RNA and ribosome biogenesis | in_reciprocal_closest_pair | 102 | 0.3333333333333333 | 0.5473333333333332 | 0.45098039215686275 | 0.6470588235294118 | 1.0 | 9.999000099990002e-05 | 0.00019998000199980003 | 0.0008570571514277144


record_id: DS001_R00019
dataset_id: DS001
record_json:
{"threshold":"primary_50id_70cov","gene_set":"Lipid-ethylene metabolism","metric":"has_close_paralog","tested_axis_genes":"42","observed_proportion":"0.8809523809523809","matched_null_mean":"0.8051976190476191","matched_null_q025":"0.6904761904761905","matched_null_q975":"0.9285714285714286","empirical_upper_p":"0.1382861713828617","empirical_lower_p":"0.9357064293570643","empirical_two_sided_p":"0.2765723427657234","q_global":"0.5185731426857314"}

search_text:
primary_50id_70cov | Lipid-ethylene metabolism | has_close_paralog | 42 | 0.8809523809523809 | 0.8051976190476191 | 0.6904761904761905 | 0.9285714285714286 | 0.1382861713828617 | 0.9357064293570643 | 0.2765723427657234 | 0.5185731426857314


record_id: DS001_R00020
dataset_id: DS001
record_json:
{"threshold":"primary_50id_70cov","gene_set":"Lipid-ethylene metabolism","metric":"in_reciprocal_closest_pair","tested_axis_genes":"42","observed_proportion":"0.5952380952380952","matched_null_mean":"0.5957857142857143","matched_null_q025":"0.4523809523809524","matched_null_q975":"0.7380952380952381","empirical_upper_p":"0.5651434856514349","empirical_lower_p":"0.5588441155884412","empirical_two_sided_p":"1.0","q_global":"1.0"}

search_text:
primary_50id_70cov | Lipid-ethylene metabolism | in_reciprocal_closest_pair | 42 | 0.5952380952380952 | 0.5957857142857143 | 0.4523809523809524 | 0.7380952380952381 | 0.5651434856514349 | 0.5588441155884412 | 1.0 | 1.0


record_id: DS001_R00021
dataset_id: DS001
record_json:
{"threshold":"strict_60id_80cov","gene_set":"All robust axis","metric":"has_close_paralog","tested_axis_genes":"196","observed_proportion":"0.576530612244898","matched_null_mean":"0.6626408163265307","matched_null_q025":"0.5969387755102041","matched_null_q975":"0.7244897959183674","empirical_upper_p":"0.9954004599540046","empirical_lower_p":"0.006399360063993601","empirical_two_sided_p":"0.012798720127987202","q_global":"0.03490560034905601"}

search_text:
strict_60id_80cov | All robust axis | has_close_paralog | 196 | 0.576530612244898 | 0.6626408163265307 | 0.5969387755102041 | 0.7244897959183674 | 0.9954004599540046 | 0.006399360063993601 | 0.012798720127987202 | 0.03490560034905601


record_id: DS001_R00022
dataset_id: DS001
record_json:
{"threshold":"strict_60id_80cov","gene_set":"All robust axis","metric":"in_reciprocal_closest_pair","tested_axis_genes":"196","observed_proportion":"0.42857142857142855","matched_null_mean":"0.5128352040816326","matched_null_q025":"0.44387755102040816","matched_null_q975":"0.5816326530612245","empirical_upper_p":"0.9927007299270073","empirical_lower_p":"0.009799020097990201","empirical_two_sided_p":"0.019598040195980403","q_global":"0.048995100489951"}

search_text:
strict_60id_80cov | All robust axis | in_reciprocal_closest_pair | 196 | 0.42857142857142855 | 0.5128352040816326 | 0.44387755102040816 | 0.5816326530612245 | 0.9927007299270073 | 0.009799020097990201 | 0.019598040195980403 | 0.048995100489951


record_id: DS001_R00023
dataset_id: DS001
record_json:
{"threshold":"strict_60id_80cov","gene_set":"High recurrence core","metric":"has_close_paralog","tested_axis_genes":"39","observed_proportion":"0.6666666666666666","matched_null_mean":"0.6561","matched_null_q025":"0.5128205128205128","matched_null_q975":"0.7948717948717948","empirical_upper_p":"0.5225477452254774","empirical_lower_p":"0.6166383361663834","empirical_two_sided_p":"1.0","q_global":"1.0"}

search_text:
strict_60id_80cov | High recurrence core | has_close_paralog | 39 | 0.6666666666666666 | 0.6561 | 0.5128205128205128 | 0.7948717948717948 | 0.5225477452254774 | 0.6166383361663834 | 1.0 | 1.0


record_id: DS001_R00024
dataset_id: DS001
record_json:
{"threshold":"strict_60id_80cov","gene_set":"High recurrence core","metric":"in_reciprocal_closest_pair","tested_axis_genes":"39","observed_proportion":"0.5641025641025641","matched_null_mean":"0.513948717948718","matched_null_q025":"0.358974358974359","matched_null_q975":"0.6666666666666666","empirical_upper_p":"0.3223677632236776","empirical_lower_p":"0.7861213878612139","empirical_two_sided_p":"0.6447355264473552","q_global":"0.9671032896710329"}

search_text:
strict_60id_80cov | High recurrence core | in_reciprocal_closest_pair | 39 | 0.5641025641025641 | 0.513948717948718 | 0.358974358974359 | 0.6666666666666666 | 0.3223677632236776 | 0.7861213878612139 | 0.6447355264473552 | 0.9671032896710329


record_id: DS001_R00025
dataset_id: DS001
record_json:
{"threshold":"strict_60id_80cov","gene_set":"Cell cycle and microtubules","metric":"has_close_paralog","tested_axis_genes":"52","observed_proportion":"0.7307692307692307","matched_null_mean":"0.6726884615384614","matched_null_q025":"0.5384615384615384","matched_null_q975":"0.7884615384615384","empirical_upper_p":"0.23067693230676933","empirical_lower_p":"0.8516148385161484","empirical_two_sided_p":"0.46135386461353867","q_global":"0.7689231076892311"}

search_text:
strict_60id_80cov | Cell cycle and microtubules | has_close_paralog | 52 | 0.7307692307692307 | 0.6726884615384614 | 0.5384615384615384 | 0.7884615384615384 | 0.23067693230676933 | 0.8516148385161484 | 0.46135386461353867 | 0.7689231076892311


record_id: DS001_R00026
dataset_id: DS001
record_json:
{"threshold":"strict_60id_80cov","gene_set":"Cell cycle and microtubules","metric":"in_reciprocal_closest_pair","tested_axis_genes":"52","observed_proportion":"0.5769230769230769","matched_null_mean":"0.5264884615384615","matched_null_q025":"0.38461538461538464","matched_null_q975":"0.6538461538461539","empirical_upper_p":"0.275972402759724","empirical_lower_p":"0.80991900809919","empirical_two_sided_p":"0.551944805519448","q_global":"0.8714917981886022"}

search_text:
strict_60id_80cov | Cell cycle and microtubules | in_reciprocal_closest_pair | 52 | 0.5769230769230769 | 0.5264884615384615 | 0.38461538461538464 | 0.6538461538461539 | 0.275972402759724 | 0.80991900809919 | 0.551944805519448 | 0.8714917981886022


record_id: DS001_R00027
dataset_id: DS001
record_json:
{"threshold":"strict_60id_80cov","gene_set":"RNA and ribosome biogenesis","metric":"has_close_paralog","tested_axis_genes":"102","observed_proportion":"0.38235294117647056","matched_null_mean":"0.6388225490196077","matched_null_q025":"0.5490196078431373","matched_null_q975":"0.7254901960784313","empirical_upper_p":"1.0","empirical_lower_p":"9.999000099990002e-05","empirical_two_sided_p":"0.00019998000199980003","q_global":"0.0008570571514277144"}

search_text:
strict_60id_80cov | RNA and ribosome biogenesis | has_close_paralog | 102 | 0.38235294117647056 | 0.6388225490196077 | 0.5490196078431373 | 0.7254901960784313 | 1.0 | 9.999000099990002e-05 | 0.00019998000199980003 | 0.0008570571514277144


record_id: DS001_R00028
dataset_id: DS001
record_json:
{"threshold":"strict_60id_80cov","gene_set":"RNA and ribosome biogenesis","metric":"in_reciprocal_closest_pair","tested_axis_genes":"102","observed_proportion":"0.29411764705882354","matched_null_mean":"0.49218725490196075","matched_null_q025":"0.39215686274509803","matched_null_q975":"0.5882352941176471","empirical_upper_p":"1.0","empirical_lower_p":"0.00019998000199980003","empirical_two_sided_p":"0.00039996000399960006","q_global":"0.0014998500149985003"}

search_text:
strict_60id_80cov | RNA and ribosome biogenesis | in_reciprocal_closest_pair | 102 | 0.29411764705882354 | 0.49218725490196075 | 0.39215686274509803 | 0.5882352941176471 | 1.0 | 0.00019998000199980003 | 0.00039996000399960006 | 0.0014998500149985003


record_id: DS001_R00029
dataset_id: DS001
record_json:
{"threshold":"strict_60id_80cov","gene_set":"Lipid-ethylene metabolism","metric":"has_close_paralog","tested_axis_genes":"42","observed_proportion":"0.8571428571428571","matched_null_mean":"0.7052833333333333","matched_null_q025":"0.5714285714285714","matched_null_q975":"0.8333333333333334","empirical_upper_p":"0.016998300169983","empirical_lower_p":"0.9941005899410059","empirical_two_sided_p":"0.033996600339966","q_global":"0.07845369309222923"}

search_text:
strict_60id_80cov | Lipid-ethylene metabolism | has_close_paralog | 42 | 0.8571428571428571 | 0.7052833333333333 | 0.5714285714285714 | 0.8333333333333334 | 0.016998300169983 | 0.9941005899410059 | 0.033996600339966 | 0.07845369309222923


record_id: DS001_R00030
dataset_id: DS001
record_json:
{"threshold":"strict_60id_80cov","gene_set":"Lipid-ethylene metabolism","metric":"in_reciprocal_closest_pair","tested_axis_genes":"42","observed_proportion":"0.5714285714285714","matched_null_mean":"0.5449166666666667","matched_null_q025":"0.40476190476190477","matched_null_q975":"0.6904761904761905","empirical_upper_p":"0.42445755424457554","empirical_lower_p":"0.6941305869413059","empirical_two_sided_p":"0.8489151084891511","q_global":"1.0"}

search_text:
strict_60id_80cov | Lipid-ethylene metabolism | in_reciprocal_closest_pair | 42 | 0.5714285714285714 | 0.5449166666666667 | 0.40476190476190477 | 0.6904761904761905 | 0.42445755424457554 | 0.6941305869413059 | 0.8489151084891511 | 1.0


record_id: DS002_R00001
dataset_id: DS002
record_json:
{"synteny_definition":"mcscan_min4","module_a":"Cell cycle and microtubules","module_b_reference":"RNA and ribosome biogenesis","module_a_retained":"32","module_a_total":"52","module_b_retained":"29","module_b_total":"101","unadjusted_odds_ratio_a_vs_b":"3.972413793103448","fisher_two_sided_p":"0.00011713935848855158","adjusted_odds_ratio_a_vs_b":"5.731663466689403","adjusted_or_ci_low":"2.4302410943017434","adjusted_or_ci_high":"13.51798641394508","adjusted_wald_p":"6.649984258483776e-05","fisher_q_global":"0.00023722028272616597","adjusted_wald_q_global":"0.00011969971665270796"}

search_text:
mcscan_min4 | Cell cycle and microtubules | RNA and ribosome biogenesis | 32 | 52 | 29 | 101 | 3.972413793103448 | 0.00011713935848855158 | 5.731663466689403 | 2.4302410943017434 | 13.51798641394508 | 6.649984258483776e-05 | 0.00023722028272616597 | 0.00011969971665270796


record_id: DS002_R00002
dataset_id: DS002
record_json:
{"synteny_definition":"mcscan_min4","module_a":"Lipid-ethylene metabolism","module_b_reference":"RNA and ribosome biogenesis","module_a_retained":"33","module_a_total":"42","module_b_retained":"29","module_b_total":"101","unadjusted_odds_ratio_a_vs_b":"9.10344827586207","fisher_two_sided_p":"7.890181257921916e-08","adjusted_odds_ratio_a_vs_b":"6.738855843961307","adjusted_or_ci_low":"2.4949146728470035","adjusted_or_ci_high":"18.201896273218274","adjusted_wald_p":"0.00016760770984050878","fisher_q_global":"7.101163132129725e-07","adjusted_wald_q_global":"0.0002514115647607632"}

search_text:
mcscan_min4 | Lipid-ethylene metabolism | RNA and ribosome biogenesis | 33 | 42 | 29 | 101 | 9.10344827586207 | 7.890181257921916e-08 | 6.738855843961307 | 2.4949146728470035 | 18.201896273218274 | 0.00016760770984050878 | 7.101163132129725e-07 | 0.0002514115647607632


record_id: DS002_R00003
dataset_id: DS002
record_json:
{"synteny_definition":"mcscan_min4","module_a":"Lipid-ethylene metabolism","module_b_reference":"Cell cycle and microtubules","module_a_retained":"33","module_a_total":"42","module_b_retained":"32","module_b_total":"52","unadjusted_odds_ratio_a_vs_b":"2.2916666666666665","fisher_two_sided_p":"0.11520119261047307","adjusted_odds_ratio_a_vs_b":"1.6120885810685173","adjusted_or_ci_low":"0.5341254278109001","adjusted_or_ci_high":"4.865579240184734","adjusted_wald_p":"0.3968351749424719","fisher_q_global":"0.14811581907060822","adjusted_wald_q_global":"0.4464395718102809"}

search_text:
mcscan_min4 | Lipid-ethylene metabolism | Cell cycle and microtubules | 33 | 42 | 32 | 52 | 2.2916666666666665 | 0.11520119261047307 | 1.6120885810685173 | 0.5341254278109001 | 4.865579240184734 | 0.3968351749424719 | 0.14811581907060822 | 0.4464395718102809


record_id: DS002_R00004
dataset_id: DS002
record_json:
{"synteny_definition":"mcscan_min10","module_a":"Cell cycle and microtubules","module_b_reference":"RNA and ribosome biogenesis","module_a_retained":"23","module_a_total":"52","module_b_retained":"17","module_b_total":"101","unadjusted_odds_ratio_a_vs_b":"3.918864097363083","fisher_two_sided_p":"0.00042094637782427757","adjusted_odds_ratio_a_vs_b":"6.761139854333271","adjusted_or_ci_low":"2.658413515809929","adjusted_or_ci_high":"17.195598750154005","adjusted_wald_p":"5.996486072234306e-05","fisher_q_global":"0.0006314195667364164","adjusted_wald_q_global":"0.00011969971665270796"}

search_text:
mcscan_min10 | Cell cycle and microtubules | RNA and ribosome biogenesis | 23 | 52 | 17 | 101 | 3.918864097363083 | 0.00042094637782427757 | 6.761139854333271 | 2.658413515809929 | 17.195598750154005 | 5.996486072234306e-05 | 0.0006314195667364164 | 0.00011969971665270796


record_id: DS002_R00005
dataset_id: DS002
record_json:
{"synteny_definition":"mcscan_min10","module_a":"Lipid-ethylene metabolism","module_b_reference":"RNA and ribosome biogenesis","module_a_retained":"25","module_a_total":"42","module_b_retained":"17","module_b_total":"101","unadjusted_odds_ratio_a_vs_b":"7.26643598615917","fisher_two_sided_p":"1.3075446997457323e-06","adjusted_odds_ratio_a_vs_b":"8.334211966850138","adjusted_or_ci_low":"3.0979270918107487","adjusted_or_ci_high":"22.421150353086247","adjusted_wald_p":"2.6756734277918727e-05","fisher_q_global":"3.922634099237197e-06","adjusted_wald_q_global":"0.00011191727293655331"}

search_text:
mcscan_min10 | Lipid-ethylene metabolism | RNA and ribosome biogenesis | 25 | 42 | 17 | 101 | 7.26643598615917 | 1.3075446997457323e-06 | 8.334211966850138 | 3.0979270918107487 | 22.421150353086247 | 2.6756734277918727e-05 | 3.922634099237197e-06 | 0.00011191727293655331


record_id: DS002_R00006
dataset_id: DS002
record_json:
{"synteny_definition":"mcscan_min10","module_a":"Lipid-ethylene metabolism","module_b_reference":"Cell cycle and microtubules","module_a_retained":"25","module_a_total":"42","module_b_retained":"23","module_b_total":"52","unadjusted_odds_ratio_a_vs_b":"1.854219948849105","fisher_two_sided_p":"0.1529085888151607","adjusted_odds_ratio_a_vs_b":"1.6253989596272793","adjusted_or_ci_low":"0.6013879882747112","adjusted_or_ci_high":"4.393040482129857","adjusted_wald_p":"0.3382821753325448","fisher_q_global":"0.17202216241705579","adjusted_wald_q_global":"0.43493422542755755"}

search_text:
mcscan_min10 | Lipid-ethylene metabolism | Cell cycle and microtubules | 25 | 42 | 23 | 52 | 1.854219948849105 | 0.1529085888151607 | 1.6253989596272793 | 0.6013879882747112 | 4.393040482129857 | 0.3382821753325448 | 0.17202216241705579 | 0.43493422542755755


record_id: DS002_R00007
dataset_id: DS002
record_json:
{"synteny_definition":"mcscan_cscore0.8_min10","module_a":"Cell cycle and microtubules","module_b_reference":"RNA and ribosome biogenesis","module_a_retained":"23","module_a_total":"52","module_b_retained":"15","module_b_total":"101","unadjusted_odds_ratio_a_vs_b":"4.5471264367816095","fisher_two_sided_p":"0.0001317890459589811","adjusted_odds_ratio_a_vs_b":"7.486523700819298","adjusted_or_ci_low":"2.8755425524994056","adjusted_or_ci_high":"19.491291156241953","adjusted_wald_p":"3.730575764551777e-05","fisher_q_global":"0.00023722028272616597","adjusted_wald_q_global":"0.00011191727293655331"}

search_text:
mcscan_cscore0.8_min10 | Cell cycle and microtubules | RNA and ribosome biogenesis | 23 | 52 | 15 | 101 | 4.5471264367816095 | 0.0001317890459589811 | 7.486523700819298 | 2.8755425524994056 | 19.491291156241953 | 3.730575764551777e-05 | 0.00023722028272616597 | 0.00011191727293655331


record_id: DS002_R00008
dataset_id: DS002
record_json:
{"synteny_definition":"mcscan_cscore0.8_min10","module_a":"Lipid-ethylene metabolism","module_b_reference":"RNA and ribosome biogenesis","module_a_retained":"24","module_a_total":"42","module_b_retained":"15","module_b_total":"101","unadjusted_odds_ratio_a_vs_b":"7.644444444444445","fisher_two_sided_p":"7.328960743565749e-07","adjusted_odds_ratio_a_vs_b":"8.90406313143493","adjusted_or_ci_low":"3.2344412163415295","adjusted_or_ci_high":"24.511912551700323","adjusted_wald_p":"2.3160831081279505e-05","fisher_q_global":"3.2980323346045873e-06","adjusted_wald_q_global":"0.00011191727293655331"}

search_text:
mcscan_cscore0.8_min10 | Lipid-ethylene metabolism | RNA and ribosome biogenesis | 24 | 42 | 15 | 101 | 7.644444444444445 | 7.328960743565749e-07 | 8.90406313143493 | 3.2344412163415295 | 24.511912551700323 | 2.3160831081279505e-05 | 3.2980323346045873e-06 | 0.00011191727293655331


record_id: DS002_R00009
dataset_id: DS002
record_json:
{"synteny_definition":"mcscan_cscore0.8_min10","module_a":"Lipid-ethylene metabolism","module_b_reference":"Cell cycle and microtubules","module_a_retained":"24","module_a_total":"42","module_b_retained":"23","module_b_total":"52","unadjusted_odds_ratio_a_vs_b":"1.681159420289855","fisher_two_sided_p":"0.29959316039998374","adjusted_odds_ratio_a_vs_b":"1.4651808648657492","adjusted_or_ci_low":"0.5446623096608331","adjusted_or_ci_high":"3.9414421168697196","adjusted_wald_p":"0.44930704354528117","fisher_q_global":"0.29959316039998374","adjusted_wald_q_global":"0.44930704354528117"}

search_text:
mcscan_cscore0.8_min10 | Lipid-ethylene metabolism | Cell cycle and microtubules | 24 | 42 | 23 | 52 | 1.681159420289855 | 0.29959316039998374 | 1.4651808648657492 | 0.5446623096608331 | 3.9414421168697196 | 0.44930704354528117 | 0.29959316039998374 | 0.44930704354528117


record_id: DS003_R00001
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_min4","gene_set":"All robust axis","tested_axis_genes":"195","observed_proportion":"0.48205128205128206","matched_null_mean":"0.5740502564102564","matched_null_q025":"0.5076923076923077","matched_null_q975":"0.6410256410256411","empirical_upper_p":"0.9958004199580042","empirical_lower_p":"0.006199380061993801","empirical_two_sided_p":"0.012398760123987601","q_global":"0.046495350464953504"}

search_text:
mcscan_min4 | All robust axis | 195 | 0.48205128205128206 | 0.5740502564102564 | 0.5076923076923077 | 0.6410256410256411 | 0.9958004199580042 | 0.006199380061993801 | 0.012398760123987601 | 0.046495350464953504


record_id: DS003_R00002
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_min4","gene_set":"High recurrence core","tested_axis_genes":"39","observed_proportion":"0.5641025641025641","matched_null_mean":"0.5650615384615384","matched_null_q025":"0.41025641025641024","matched_null_q975":"0.717948717948718","empirical_upper_p":"0.5678432156784322","empirical_lower_p":"0.5582441755824418","empirical_two_sided_p":"1.0","q_global":"1.0"}

search_text:
mcscan_min4 | High recurrence core | 39 | 0.5641025641025641 | 0.5650615384615384 | 0.41025641025641024 | 0.717948717948718 | 0.5678432156784322 | 0.5582441755824418 | 1.0 | 1.0


record_id: DS003_R00003
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_min4","gene_set":"Cell cycle and microtubules","tested_axis_genes":"52","observed_proportion":"0.6153846153846154","matched_null_mean":"0.5833615384615385","matched_null_q025":"0.4423076923076923","matched_null_q975":"0.7115384615384616","empirical_upper_p":"0.37366263373662634","empirical_lower_p":"0.7319268073192681","empirical_two_sided_p":"0.7473252674732527","q_global":"0.8622983855460608"}

search_text:
mcscan_min4 | Cell cycle and microtubules | 52 | 0.6153846153846154 | 0.5833615384615385 | 0.4423076923076923 | 0.7115384615384616 | 0.37366263373662634 | 0.7319268073192681 | 0.7473252674732527 | 0.8622983855460608


record_id: DS003_R00004
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_min4","gene_set":"RNA and ribosome biogenesis","tested_axis_genes":"101","observed_proportion":"0.2871287128712871","matched_null_mean":"0.5529287128712871","matched_null_q025":"0.45544554455445546","matched_null_q975":"0.6534653465346535","empirical_upper_p":"1.0","empirical_lower_p":"9.999000099990002e-05","empirical_two_sided_p":"0.00019998000199980003","q_global":"0.000999900009999"}

search_text:
mcscan_min4 | RNA and ribosome biogenesis | 101 | 0.2871287128712871 | 0.5529287128712871 | 0.45544554455445546 | 0.6534653465346535 | 1.0 | 9.999000099990002e-05 | 0.00019998000199980003 | 0.000999900009999


record_id: DS003_R00005
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_min4","gene_set":"Lipid-ethylene metabolism","tested_axis_genes":"42","observed_proportion":"0.7857142857142857","matched_null_mean":"0.6115095238095238","matched_null_q025":"0.4523809523809524","matched_null_q975":"0.7619047619047619","empirical_upper_p":"0.013298670132986702","empirical_lower_p":"0.9958004199580042","empirical_two_sided_p":"0.026597340265973404","q_global":"0.07979202079792022"}

search_text:
mcscan_min4 | Lipid-ethylene metabolism | 42 | 0.7857142857142857 | 0.6115095238095238 | 0.4523809523809524 | 0.7619047619047619 | 0.013298670132986702 | 0.9958004199580042 | 0.026597340265973404 | 0.07979202079792022


record_id: DS003_R00006
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_min10","gene_set":"All robust axis","tested_axis_genes":"195","observed_proportion":"0.3333333333333333","matched_null_mean":"0.40580153846153855","matched_null_q025":"0.3384615384615385","matched_null_q975":"0.47692307692307695","empirical_upper_p":"0.9844015598440156","empirical_lower_p":"0.022097790220977902","empirical_two_sided_p":"0.044195580441955803","q_global":"0.09599040095990401"}

search_text:
mcscan_min10 | All robust axis | 195 | 0.3333333333333333 | 0.40580153846153855 | 0.3384615384615385 | 0.47692307692307695 | 0.9844015598440156 | 0.022097790220977902 | 0.044195580441955803 | 0.09599040095990401


record_id: DS003_R00007
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_min10","gene_set":"High recurrence core","tested_axis_genes":"39","observed_proportion":"0.3333333333333333","matched_null_mean":"0.4029923076923077","matched_null_q025":"0.2564102564102564","matched_null_q975":"0.5641025641025641","empirical_upper_p":"0.8576142385761424","empirical_lower_p":"0.23397660233976603","empirical_two_sided_p":"0.46795320467953205","q_global":"0.6738417067384171"}

search_text:
mcscan_min10 | High recurrence core | 39 | 0.3333333333333333 | 0.4029923076923077 | 0.2564102564102564 | 0.5641025641025641 | 0.8576142385761424 | 0.23397660233976603 | 0.46795320467953205 | 0.6738417067384171


record_id: DS003_R00008
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_min10","gene_set":"Cell cycle and microtubules","tested_axis_genes":"52","observed_proportion":"0.4423076923076923","matched_null_mean":"0.417","matched_null_q025":"0.28846153846153844","matched_null_q975":"0.5576923076923077","empirical_upper_p":"0.40945905409459055","empirical_lower_p":"0.6956304369563043","empirical_two_sided_p":"0.8189181081891811","q_global":"0.8774122587741225"}

search_text:
mcscan_min10 | Cell cycle and microtubules | 52 | 0.4423076923076923 | 0.417 | 0.28846153846153844 | 0.5576923076923077 | 0.40945905409459055 | 0.6956304369563043 | 0.8189181081891811 | 0.8774122587741225


record_id: DS003_R00009
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_min10","gene_set":"RNA and ribosome biogenesis","tested_axis_genes":"101","observed_proportion":"0.16831683168316833","matched_null_mean":"0.3873039603960397","matched_null_q025":"0.2871287128712871","matched_null_q975":"0.48514851485148514","empirical_upper_p":"1.0","empirical_lower_p":"9.999000099990002e-05","empirical_two_sided_p":"0.00019998000199980003","q_global":"0.000999900009999"}

search_text:
mcscan_min10 | RNA and ribosome biogenesis | 101 | 0.16831683168316833 | 0.3873039603960397 | 0.2871287128712871 | 0.48514851485148514 | 1.0 | 9.999000099990002e-05 | 0.00019998000199980003 | 0.000999900009999


record_id: DS003_R00010
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_min10","gene_set":"Lipid-ethylene metabolism","tested_axis_genes":"42","observed_proportion":"0.5952380952380952","matched_null_mean":"0.43852619047619046","matched_null_q025":"0.2857142857142857","matched_null_q975":"0.5952380952380952","empirical_upper_p":"0.0313968603139686","empirical_lower_p":"0.9848015198480152","empirical_two_sided_p":"0.0627937206279372","q_global":"0.11773822617738225"}

search_text:
mcscan_min10 | Lipid-ethylene metabolism | 42 | 0.5952380952380952 | 0.43852619047619046 | 0.2857142857142857 | 0.5952380952380952 | 0.0313968603139686 | 0.9848015198480152 | 0.0627937206279372 | 0.11773822617738225


record_id: DS003_R00011
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_cscore0.8_min10","gene_set":"All robust axis","tested_axis_genes":"195","observed_proportion":"0.31794871794871793","matched_null_mean":"0.37624307692307696","matched_null_q025":"0.3076923076923077","matched_null_q975":"0.4461538461538462","empirical_upper_p":"0.9618038196180382","empirical_lower_p":"0.0524947505249475","empirical_two_sided_p":"0.104989501049895","q_global":"0.17498250174982502"}

search_text:
mcscan_cscore0.8_min10 | All robust axis | 195 | 0.31794871794871793 | 0.37624307692307696 | 0.3076923076923077 | 0.4461538461538462 | 0.9618038196180382 | 0.0524947505249475 | 0.104989501049895 | 0.17498250174982502


record_id: DS003_R00012
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_cscore0.8_min10","gene_set":"High recurrence core","tested_axis_genes":"39","observed_proportion":"0.3333333333333333","matched_null_mean":"0.37538205128205127","matched_null_q025":"0.23076923076923078","matched_null_q975":"0.5384615384615384","empirical_upper_p":"0.7599240075992401","empirical_lower_p":"0.36246375362463756","empirical_two_sided_p":"0.7249275072492751","q_global":"0.8622983855460608"}

search_text:
mcscan_cscore0.8_min10 | High recurrence core | 39 | 0.3333333333333333 | 0.37538205128205127 | 0.23076923076923078 | 0.5384615384615384 | 0.7599240075992401 | 0.36246375362463756 | 0.7249275072492751 | 0.8622983855460608


record_id: DS003_R00013
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_cscore0.8_min10","gene_set":"Cell cycle and microtubules","tested_axis_genes":"52","observed_proportion":"0.4423076923076923","matched_null_mean":"0.386825","matched_null_q025":"0.25","matched_null_q975":"0.5192307692307693","empirical_upper_p":"0.24707529247075294","empirical_lower_p":"0.8337166283371663","empirical_two_sided_p":"0.4941505849415059","q_global":"0.6738417067384171"}

search_text:
mcscan_cscore0.8_min10 | Cell cycle and microtubules | 52 | 0.4423076923076923 | 0.386825 | 0.25 | 0.5192307692307693 | 0.24707529247075294 | 0.8337166283371663 | 0.4941505849415059 | 0.6738417067384171


record_id: DS003_R00014
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_cscore0.8_min10","gene_set":"RNA and ribosome biogenesis","tested_axis_genes":"101","observed_proportion":"0.1485148514851485","matched_null_mean":"0.3596227722772278","matched_null_q025":"0.26732673267326734","matched_null_q975":"0.45544554455445546","empirical_upper_p":"1.0","empirical_lower_p":"9.999000099990002e-05","empirical_two_sided_p":"0.00019998000199980003","q_global":"0.000999900009999"}

search_text:
mcscan_cscore0.8_min10 | RNA and ribosome biogenesis | 101 | 0.1485148514851485 | 0.3596227722772278 | 0.26732673267326734 | 0.45544554455445546 | 1.0 | 9.999000099990002e-05 | 0.00019998000199980003 | 0.000999900009999


record_id: DS003_R00015
dataset_id: DS003
record_json:
{"synteny_definition":"mcscan_cscore0.8_min10","gene_set":"Lipid-ethylene metabolism","tested_axis_genes":"42","observed_proportion":"0.5714285714285714","matched_null_mean":"0.40548571428571434","matched_null_q025":"0.2619047619047619","matched_null_q975":"0.5476190476190477","empirical_upper_p":"0.022397760223977603","empirical_lower_p":"0.9911008899110089","empirical_two_sided_p":"0.044795520447955206","q_global":"0.09599040095990401"}

search_text:
mcscan_cscore0.8_min10 | Lipid-ethylene metabolism | 42 | 0.5714285714285714 | 0.40548571428571434 | 0.2619047619047619 | 0.5476190476190477 | 0.022397760223977603 | 0.9911008899110089 | 0.044795520447955206 | 0.09599040095990401


record_id: DS004_R00001
dataset_id: DS004
record_json:
{"gene_id":"Ma06_g25850","robust_pathway_count":"1","robust_module_count":"1","modules":"Lipid-ethylene metabolism","pathways":"GO:0006633 | fatty acid biosynthetic process","all_three_pathway_count":"1","GO_annotation":"Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","Swiss_Prot_annotation":"3-ketoacyl-CoA synthase 11","NR_annotation":"PREDICTED: 3-ketoacyl-CoA synthase 11-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-5.20802742989499","recovery_shrunk_log2fc":"-0.180985258619821","recovery_padj":"0.200841589945677","reciprocal_log2fc":"2.76841390701212","reciprocal_shrunk_log2fc":"2.39715738686669","reciprocal_padj":"1.2659532992904502e-15","exclude_pair_log2fc":"2.82930427450252","exclude_pair_shrunk_log2fc":"2.38682276953631","exclude_pair_padj":"3.3134024971527096e-11","five_traceable_log2fc":"2.6734975552827","five_traceable_shrunk_log2fc":"2.3218557316807","five_traceable_padj":"2.16957658788086e-12","paper_counts_log2fc":"2.64987335831874","paper_counts_shrunk_log2fc":"2.49022843639608","paper_counts_padj":"6.19649876376642e-27","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"2.38682276953631","corrected_median_base_mean":"881.24996191545","corrected_direction_stable":"True","protein_length":"488.0","replicated_peak_count":"2","both_promoter_peak_count":"1","either_promoter_peak_count":"1","motif_peak_count":"1","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"1","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"8.98701","max_geometric_mean_fold_enrichment":"9.797534982412667","max_overlap_bp":"427.0","replicated_target":"True","both_promoter_target":"True","either_promoter_target":"True","replicated_motif_target":"True","both_promoter_motif_target":"True","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"2","same_gene_maeil9_dap_dhs_overlap":"True","bridge_priority":"four-gene lipid-ethylene bridge"}

search_text:
Ma06_g25850 | 1 | 1 | Lipid-ethylene metabolism | GO:0006633 | fatty acid biosynthetic process | 1 | Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);;  | 3-ketoacyl-CoA synthase 11 | PREDICTED: 3-ketoacyl-CoA synthase 11-like [Musa acuminata subsp. malaccensis] | -5.20802742989499 | -0.180985258619821 | 0.200841589945677 | 2.76841390701212 | 2.39715738686669 | 1.2659532992904502e-15 | 2.82930427450252 | 2.38682276953631 | 3.3134024971527096e-11 | 2.6734975552827 | 2.3218557316807 | 2.16957658788086e-12 | 2.64987335831874 | 2.49022843639608 | 6.19649876376642e-27 | True | True | 2.38682276953631 | 881.24996191545 | True | 488.0 | 2 | 1 | 1 | 1 | 0 | 1 | 0 | 8.98701 | 9.797534982412667 | 427.0 | True | True | True | True | True | False | 2 | True | four-gene lipid-ethylene bridge


record_id: DS004_R00002
dataset_id: DS004
record_json:
{"gene_id":"Ma02_g09210","robust_pathway_count":"1","robust_module_count":"1","modules":"Lipid-ethylene metabolism","pathways":"GO:0009873 | ethylene-activated signaling pathway","all_three_pathway_count":"1","GO_annotation":"--","Swiss_Prot_annotation":"Ethylene-responsive transcription factor 1","NR_annotation":"PREDICTED: ethylene-responsive transcription factor 1-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-0.934075524170199","recovery_shrunk_log2fc":"-0.341636142801689","recovery_padj":"0.632966224623966","reciprocal_log2fc":"1.94250441722249","reciprocal_shrunk_log2fc":"1.77575933023231","reciprocal_padj":"1.12266511622741e-12","exclude_pair_log2fc":"2.19306806361669","exclude_pair_shrunk_log2fc":"2.02600727621383","exclude_pair_padj":"5.925294679239441e-15","five_traceable_log2fc":"2.21383085454308","five_traceable_shrunk_log2fc":"2.13803409180889","five_traceable_padj":"9.82210954684198e-35","paper_counts_log2fc":"2.18163756329322","paper_counts_shrunk_log2fc":"2.11718422871723","paper_counts_padj":"3.02875747841616e-38","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"2.02600727621383","corrected_median_base_mean":"1411.13044234986","corrected_direction_stable":"True","protein_length":"354.0","replicated_peak_count":"1","both_promoter_peak_count":"1","either_promoter_peak_count":"1","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"1","both_promoter_summit50_motif_peak_count":"1","max_minimum_fold_enrichment":"7.64349","max_geometric_mean_fold_enrichment":"7.931388047101214","max_overlap_bp":"860.0","replicated_target":"True","both_promoter_target":"True","either_promoter_target":"True","replicated_motif_target":"True","both_promoter_motif_target":"True","both_promoter_summit50_motif_target":"True","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"True","bridge_priority":"four-gene lipid-ethylene bridge"}

search_text:
Ma02_g09210 | 1 | 1 | Lipid-ethylene metabolism | GO:0009873 | ethylene-activated signaling pathway | 1 | -- | Ethylene-responsive transcription factor 1 | PREDICTED: ethylene-responsive transcription factor 1-like [Musa acuminata subsp. malaccensis] | -0.934075524170199 | -0.341636142801689 | 0.632966224623966 | 1.94250441722249 | 1.77575933023231 | 1.12266511622741e-12 | 2.19306806361669 | 2.02600727621383 | 5.925294679239441e-15 | 2.21383085454308 | 2.13803409180889 | 9.82210954684198e-35 | 2.18163756329322 | 2.11718422871723 | 3.02875747841616e-38 | True | True | 2.02600727621383 | 1411.13044234986 | True | 354.0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 7.64349 | 7.931388047101214 | 860.0 | True | True | True | True | True | True | 1 | True | four-gene lipid-ethylene bridge


record_id: DS004_R00003
dataset_id: DS004
record_json:
{"gene_id":"Ma04_g37200","robust_pathway_count":"1","robust_module_count":"1","modules":"Lipid-ethylene metabolism","pathways":"GO:0009873 | ethylene-activated signaling pathway","all_three_pathway_count":"1","GO_annotation":"--","Swiss_Prot_annotation":"EIN3-binding F-box protein 1","NR_annotation":"PREDICTED: EIN3-binding F-box protein 1-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-1.0041180613401","recovery_shrunk_log2fc":"-0.722064864404796","recovery_padj":"0.0885902569925512","reciprocal_log2fc":"1.54278772656346","reciprocal_shrunk_log2fc":"1.47811156046288","reciprocal_padj":"4.54329653311283e-17","exclude_pair_log2fc":"1.66264092685611","exclude_pair_shrunk_log2fc":"1.54184863805568","exclude_pair_padj":"3.6284363916722e-09","five_traceable_log2fc":"1.63097369648127","five_traceable_shrunk_log2fc":"1.5739126091125","five_traceable_padj":"1.4490404362403199e-18","paper_counts_log2fc":"3.2562965374269","paper_counts_shrunk_log2fc":"3.19976332950896","paper_counts_padj":"2.73615640609214e-146","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"1.54184863805568","corrected_median_base_mean":"6833.47122327604","corrected_direction_stable":"True","protein_length":"652.0","replicated_peak_count":"1","both_promoter_peak_count":"1","either_promoter_peak_count":"1","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"1","both_promoter_summit50_motif_peak_count":"1","max_minimum_fold_enrichment":"111.85599","max_geometric_mean_fold_enrichment":"118.5052763761247","max_overlap_bp":"1387.0","replicated_target":"True","both_promoter_target":"True","either_promoter_target":"True","replicated_motif_target":"True","both_promoter_motif_target":"True","both_promoter_summit50_motif_target":"True","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"True","bridge_priority":"four-gene lipid-ethylene bridge"}

search_text:
Ma04_g37200 | 1 | 1 | Lipid-ethylene metabolism | GO:0009873 | ethylene-activated signaling pathway | 1 | -- | EIN3-binding F-box protein 1 | PREDICTED: EIN3-binding F-box protein 1-like [Musa acuminata subsp. malaccensis] | -1.0041180613401 | -0.722064864404796 | 0.0885902569925512 | 1.54278772656346 | 1.47811156046288 | 4.54329653311283e-17 | 1.66264092685611 | 1.54184863805568 | 3.6284363916722e-09 | 1.63097369648127 | 1.5739126091125 | 1.4490404362403199e-18 | 3.2562965374269 | 3.19976332950896 | 2.73615640609214e-146 | True | True | 1.54184863805568 | 6833.47122327604 | True | 652.0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 111.85599 | 118.5052763761247 | 1387.0 | True | True | True | True | True | True | 1 | True | four-gene lipid-ethylene bridge


record_id: DS004_R00004
dataset_id: DS004
record_json:
{"gene_id":"Ma10_g18290","robust_pathway_count":"1","robust_module_count":"1","modules":"Lipid-ethylene metabolism","pathways":"GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","all_three_pathway_count":"1","GO_annotation":"Molecular Function: UDP-glucose 6-dehydrogenase activity (GO:0003979);; Molecular Function: NAD binding (GO:0051287);; Biological Process: oxidation-reduction process (GO:0055114);; ","Swiss_Prot_annotation":"UDP-glucose 6-dehydrogenase 4","NR_annotation":"PREDICTED: UDP-glucose 6-dehydrogenase 4-like [Musa acuminata subsp. malaccensis] ","recovery_log2fc":"-2.77361931059563","recovery_shrunk_log2fc":"-0.352570546989222","recovery_padj":"0.337951244697064","reciprocal_log2fc":"1.00987636200964","reciprocal_shrunk_log2fc":"0.811072295475697","reciprocal_padj":"0.0597720909175135","exclude_pair_log2fc":"0.981849606870602","exclude_pair_shrunk_log2fc":"0.750992699588306","exclude_pair_padj":"0.188900665259875","five_traceable_log2fc":"0.939124617389422","five_traceable_shrunk_log2fc":"0.755123649613661","five_traceable_padj":"0.108764360227034","paper_counts_log2fc":"2.0969779819997","paper_counts_shrunk_log2fc":"0.221768779571082","paper_counts_padj":"0.558943887656015","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"0.755123649613661","corrected_median_base_mean":"1602.21374180358","corrected_direction_stable":"True","protein_length":"480.0","replicated_peak_count":"1","both_promoter_peak_count":"1","either_promoter_peak_count":"1","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"15.10056","max_geometric_mean_fold_enrichment":"17.242279464896743","max_overlap_bp":"427.0","replicated_target":"True","both_promoter_target":"True","either_promoter_target":"True","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"2","same_gene_maeil9_dap_dhs_overlap":"True","bridge_priority":"four-gene lipid-ethylene bridge"}

search_text:
Ma10_g18290 | 1 | 1 | Lipid-ethylene metabolism | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 1 | Molecular Function: UDP-glucose 6-dehydrogenase activity (GO:0003979);; Molecular Function: NAD binding (GO:0051287);; Biological Process: oxidation-reduction process (GO:0055114);;  | UDP-glucose 6-dehydrogenase 4 | PREDICTED: UDP-glucose 6-dehydrogenase 4-like [Musa acuminata subsp. malaccensis]  | -2.77361931059563 | -0.352570546989222 | 0.337951244697064 | 1.00987636200964 | 0.811072295475697 | 0.0597720909175135 | 0.981849606870602 | 0.750992699588306 | 0.188900665259875 | 0.939124617389422 | 0.755123649613661 | 0.108764360227034 | 2.0969779819997 | 0.221768779571082 | 0.558943887656015 | True | True | 0.755123649613661 | 1602.21374180358 | True | 480.0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 15.10056 | 17.242279464896743 | 427.0 | True | True | True | False | False | False | 2 | True | four-gene lipid-ethylene bridge


record_id: DS004_R00005
dataset_id: DS004
record_json:
{"gene_id":"Ma05_g22740","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0006950 | response to stress","all_three_pathway_count":"0","GO_annotation":"Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","Swiss_Prot_annotation":"Peroxidase 5","NR_annotation":"PREDICTED: peroxidase 5-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-3.35657841791093","recovery_shrunk_log2fc":"-0.457788944307265","recovery_padj":"0.151876448714955","reciprocal_log2fc":"3.11874267405015","reciprocal_shrunk_log2fc":"1.31825412938253","reciprocal_padj":"0.0090550748409875","exclude_pair_log2fc":"3.27361761546232","exclude_pair_shrunk_log2fc":"0.928361177147161","exclude_pair_padj":"0.092505461012871","five_traceable_log2fc":"3.18467354229615","five_traceable_shrunk_log2fc":"1.29895743348725","five_traceable_padj":"0.0174030825062872","paper_counts_log2fc":"2.95160687416279","paper_counts_shrunk_log2fc":"1.38123336395503","paper_counts_padj":"0.0088979056494882","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"1.29895743348725","corrected_median_base_mean":"12.4720764918613","corrected_direction_stable":"True","protein_length":"325.0","replicated_peak_count":"1","both_promoter_peak_count":"1","either_promoter_peak_count":"1","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"1","both_promoter_summit50_motif_peak_count":"1","max_minimum_fold_enrichment":"17.55512","max_geometric_mean_fold_enrichment":"18.986902447613723","max_overlap_bp":"667.0","replicated_target":"True","both_promoter_target":"True","either_promoter_target":"True","replicated_motif_target":"True","both_promoter_motif_target":"True","both_promoter_summit50_motif_target":"True","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"True","bridge_priority":"other exact accessible bridge"}

search_text:
Ma05_g22740 | 1 | 1 | RNA and ribosome biogenesis | GO:0006950 | response to stress | 0 | Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);;  | Peroxidase 5 | PREDICTED: peroxidase 5-like [Musa acuminata subsp. malaccensis] | -3.35657841791093 | -0.457788944307265 | 0.151876448714955 | 3.11874267405015 | 1.31825412938253 | 0.0090550748409875 | 3.27361761546232 | 0.928361177147161 | 0.092505461012871 | 3.18467354229615 | 1.29895743348725 | 0.0174030825062872 | 2.95160687416279 | 1.38123336395503 | 0.0088979056494882 | True | True | 1.29895743348725 | 12.4720764918613 | True | 325.0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 17.55512 | 18.986902447613723 | 667.0 | True | True | True | True | True | True | 1 | True | other exact accessible bridge


record_id: DS004_R00006
dataset_id: DS004
record_json:
{"gene_id":"Ma07_g14810","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0008033 | tRNA processing","all_three_pathway_count":"1","GO_annotation":"Biological Process: tRNA nucleoside ribose methylation (GO:0002128);; Biological Process: cytoplasmic translation (GO:0002181);; Cellular Component: cytoplasm (GO:0005737);; Molecular Function: tRNA methyltransferase activity (GO:0008175);; ","Swiss_Prot_annotation":"--","NR_annotation":"PREDICTED: putative tRNA (cytidine(32)/guanosine(34)-2&apos;-O)-methyltransferase [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.322231543310704","recovery_shrunk_log2fc":"0.244520113499281","recovery_padj":"0.734053859156403","reciprocal_log2fc":"-0.198705065612931","reciprocal_shrunk_log2fc":"-0.189734843228987","reciprocal_padj":"0.48440553254717","exclude_pair_log2fc":"-0.234682631329172","exclude_pair_shrunk_log2fc":"-0.215619577695978","exclude_pair_padj":"0.652798924542974","five_traceable_log2fc":"-0.282433319179865","five_traceable_shrunk_log2fc":"-0.271745490667499","five_traceable_padj":"0.259954177315048","paper_counts_log2fc":"-0.0513673370703999","paper_counts_shrunk_log2fc":"-0.0482723335276131","paper_counts_padj":"0.892935111083731","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.215619577695978","corrected_median_base_mean":"638.824207934149","corrected_direction_stable":"True","protein_length":"319.0","replicated_peak_count":"4","both_promoter_peak_count":"1","either_promoter_peak_count":"1","motif_peak_count":"2","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"1","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"72.58163","max_geometric_mean_fold_enrichment":"78.87133644820975","max_overlap_bp":"623.0","replicated_target":"True","both_promoter_target":"True","either_promoter_target":"True","replicated_motif_target":"True","both_promoter_motif_target":"True","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"2","same_gene_maeil9_dap_dhs_overlap":"True","bridge_priority":"other exact accessible bridge"}

search_text:
Ma07_g14810 | 1 | 1 | RNA and ribosome biogenesis | GO:0008033 | tRNA processing | 1 | Biological Process: tRNA nucleoside ribose methylation (GO:0002128);; Biological Process: cytoplasmic translation (GO:0002181);; Cellular Component: cytoplasm (GO:0005737);; Molecular Function: tRNA methyltransferase activity (GO:0008175);;  | -- | PREDICTED: putative tRNA (cytidine(32)/guanosine(34)-2&apos;-O)-methyltransferase [Musa acuminata subsp. malaccensis] | 0.322231543310704 | 0.244520113499281 | 0.734053859156403 | -0.198705065612931 | -0.189734843228987 | 0.48440553254717 | -0.234682631329172 | -0.215619577695978 | 0.652798924542974 | -0.282433319179865 | -0.271745490667499 | 0.259954177315048 | -0.0513673370703999 | -0.0482723335276131 | 0.892935111083731 | True | True | -0.215619577695978 | 638.824207934149 | True | 319.0 | 4 | 1 | 1 | 2 | 1 | 1 | 0 | 72.58163 | 78.87133644820975 | 623.0 | True | True | True | True | True | False | 2 | True | other exact accessible bridge


record_id: DS004_R00007
dataset_id: DS004
record_json:
{"gene_id":"Ma04_g16120","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0005730 | nucleolus","all_three_pathway_count":"1","GO_annotation":"--","Swiss_Prot_annotation":"Notchless protein homolog","NR_annotation":"PREDICTED: uncharacterized protein LOC103981786 isoform X2 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"1.01856049943102","recovery_shrunk_log2fc":"0.530403217252475","recovery_padj":"0.376183100990436","reciprocal_log2fc":"-0.42124487328964","reciprocal_shrunk_log2fc":"-0.392064504708744","reciprocal_padj":"0.181973049012365","exclude_pair_log2fc":"-0.549306076804577","exclude_pair_shrunk_log2fc":"-0.491675787041165","exclude_pair_padj":"0.250553898636642","five_traceable_log2fc":"-0.512736996786286","five_traceable_shrunk_log2fc":"-0.480457606693381","five_traceable_padj":"0.0961833435154551","paper_counts_log2fc":"-0.504952971148389","paper_counts_shrunk_log2fc":"-0.495219931329066","paper_counts_padj":"0.000634981077693","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.480457606693381","corrected_median_base_mean":"819.145451500576","corrected_direction_stable":"True","protein_length":"649.0","replicated_peak_count":"1","both_promoter_peak_count":"1","either_promoter_peak_count":"1","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"1","both_promoter_summit50_motif_peak_count":"1","max_minimum_fold_enrichment":"7.78007","max_geometric_mean_fold_enrichment":"8.770102942862188","max_overlap_bp":"426.0","replicated_target":"True","both_promoter_target":"True","either_promoter_target":"True","replicated_motif_target":"True","both_promoter_motif_target":"True","both_promoter_summit50_motif_target":"True","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"True","bridge_priority":"other exact accessible bridge"}

search_text:
Ma04_g16120 | 1 | 1 | RNA and ribosome biogenesis | GO:0005730 | nucleolus | 1 | -- | Notchless protein homolog | PREDICTED: uncharacterized protein LOC103981786 isoform X2 [Musa acuminata subsp. malaccensis] | 1.01856049943102 | 0.530403217252475 | 0.376183100990436 | -0.42124487328964 | -0.392064504708744 | 0.181973049012365 | -0.549306076804577 | -0.491675787041165 | 0.250553898636642 | -0.512736996786286 | -0.480457606693381 | 0.0961833435154551 | -0.504952971148389 | -0.495219931329066 | 0.000634981077693 | True | True | -0.480457606693381 | 819.145451500576 | True | 649.0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 7.78007 | 8.770102942862188 | 426.0 | True | True | True | True | True | True | 1 | True | other exact accessible bridge


record_id: DS004_R00008
dataset_id: DS004
record_json:
{"gene_id":"Ma10_g12970","robust_pathway_count":"1","robust_module_count":"1","modules":"Lipid-ethylene metabolism","pathways":"GO:0009873 | ethylene-activated signaling pathway","all_three_pathway_count":"1","GO_annotation":"Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","Swiss_Prot_annotation":"Protein ETHYLENE INSENSITIVE 3","NR_annotation":"PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein [Musa acuminata subsp. malaccensis] ","recovery_log2fc":"-4.6670437267411","recovery_shrunk_log2fc":"-0.327201495891902","recovery_padj":"0.174417852213522","reciprocal_log2fc":"1.12823460732096","reciprocal_shrunk_log2fc":"1.02555409954253","reciprocal_padj":"0.0002384279270817","exclude_pair_log2fc":"1.28705550326017","exclude_pair_shrunk_log2fc":"1.1563440307849","exclude_pair_padj":"0.0004291409670841","five_traceable_log2fc":"1.33281695645555","five_traceable_shrunk_log2fc":"1.24585621269144","five_traceable_padj":"7.93969015403449e-07","paper_counts_log2fc":"1.45138286567783","paper_counts_shrunk_log2fc":"1.39974851777744","paper_counts_padj":"2.42069341747071e-14","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"1.1563440307849","corrected_median_base_mean":"5357.53478327486","corrected_direction_stable":"True","protein_length":"637.0","replicated_peak_count":"2","both_promoter_peak_count":"1","either_promoter_peak_count":"1","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"4.5185","max_geometric_mean_fold_enrichment":"5.272397318108718","max_overlap_bp":"315.0","replicated_target":"True","both_promoter_target":"True","either_promoter_target":"True","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible promoter-bound candidate"}

search_text:
Ma10_g12970 | 1 | 1 | Lipid-ethylene metabolism | GO:0009873 | ethylene-activated signaling pathway | 1 | Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);;  | Protein ETHYLENE INSENSITIVE 3 | PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein [Musa acuminata subsp. malaccensis]  | -4.6670437267411 | -0.327201495891902 | 0.174417852213522 | 1.12823460732096 | 1.02555409954253 | 0.0002384279270817 | 1.28705550326017 | 1.1563440307849 | 0.0004291409670841 | 1.33281695645555 | 1.24585621269144 | 7.93969015403449e-07 | 1.45138286567783 | 1.39974851777744 | 2.42069341747071e-14 | True | True | 1.1563440307849 | 5357.53478327486 | True | 637.0 | 2 | 1 | 1 | 1 | 1 | 0 | 0 | 4.5185 | 5.272397318108718 | 315.0 | True | True | True | True | False | False | 1 | False | accessible promoter-bound candidate


record_id: DS004_R00009
dataset_id: DS004
record_json:
{"gene_id":"Ma06_g31220","robust_pathway_count":"2","robust_module_count":"1","modules":"Cell cycle and microtubules","pathways":"GO:0005874 | microtubule;GO:0008017 | microtubule binding","all_three_pathway_count":"2","GO_annotation":"--","Swiss_Prot_annotation":"Protein TPX2","NR_annotation":"PREDICTED: protein TPX2-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.837109100520438","recovery_shrunk_log2fc":"0.525257574426389","recovery_padj":"0.359616913946809","reciprocal_log2fc":"-0.630883276814298","reciprocal_shrunk_log2fc":"-0.58677854032216","reciprocal_padj":"0.0292282740974022","exclude_pair_log2fc":"-0.4408423777282","exclude_pair_shrunk_log2fc":"-0.406351238958556","exclude_pair_padj":"0.288723627702116","five_traceable_log2fc":"-0.427375740744024","five_traceable_shrunk_log2fc":"-0.411932970109813","five_traceable_padj":"0.0579039306250487","paper_counts_log2fc":"-0.472252635172571","paper_counts_shrunk_log2fc":"-0.460200052029267","paper_counts_padj":"0.006951898702665","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.411932970109813","corrected_median_base_mean":"1270.38061528494","corrected_direction_stable":"True","protein_length":"802.0","replicated_peak_count":"1","both_promoter_peak_count":"1","either_promoter_peak_count":"1","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"1","both_promoter_summit50_motif_peak_count":"1","max_minimum_fold_enrichment":"6.70916","max_geometric_mean_fold_enrichment":"7.027688658043981","max_overlap_bp":"414.0","replicated_target":"True","both_promoter_target":"True","either_promoter_target":"True","replicated_motif_target":"True","both_promoter_motif_target":"True","both_promoter_summit50_motif_target":"True","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible promoter-bound candidate"}

search_text:
Ma06_g31220 | 2 | 1 | Cell cycle and microtubules | GO:0005874 | microtubule;GO:0008017 | microtubule binding | 2 | -- | Protein TPX2 | PREDICTED: protein TPX2-like [Musa acuminata subsp. malaccensis] | 0.837109100520438 | 0.525257574426389 | 0.359616913946809 | -0.630883276814298 | -0.58677854032216 | 0.0292282740974022 | -0.4408423777282 | -0.406351238958556 | 0.288723627702116 | -0.427375740744024 | -0.411932970109813 | 0.0579039306250487 | -0.472252635172571 | -0.460200052029267 | 0.006951898702665 | True | True | -0.411932970109813 | 1270.38061528494 | True | 802.0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 6.70916 | 7.027688658043981 | 414.0 | True | True | True | True | True | True | 1 | False | accessible promoter-bound candidate


record_id: DS004_R00010
dataset_id: DS004
record_json:
{"gene_id":"Ma06_g35010","robust_pathway_count":"4","robust_module_count":"1","modules":"Cell cycle and microtubules","pathways":"GO:0003777 | microtubule motor activity;GO:0005874 | microtubule;GO:0007018 | microtubule-based movement;GO:0008017 | microtubule binding","all_three_pathway_count":"4","GO_annotation":"Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: ATP-dependent microtubule motor activity, plus-end-directed (GO:0008574);; ","Swiss_Prot_annotation":"Kinesin-like protein KIN-5A","NR_annotation":"PREDICTED: kinesin-like protein KIN-5A [Musa acuminata subsp. malaccensis]","recovery_log2fc":"1.29402982781656","recovery_shrunk_log2fc":"0.379764271875544","recovery_padj":"0.530909681389813","reciprocal_log2fc":"-0.629946129363289","reciprocal_shrunk_log2fc":"-0.576704394211604","reciprocal_padj":"0.0550942186183432","exclude_pair_log2fc":"-0.447592819607773","exclude_pair_shrunk_log2fc":"-0.395605121445737","exclude_pair_padj":"0.418958811825465","five_traceable_log2fc":"-0.467261154547038","five_traceable_shrunk_log2fc":"-0.435643851030884","five_traceable_padj":"0.154953262962074","paper_counts_log2fc":"-0.59406565278556","paper_counts_shrunk_log2fc":"-0.569264115697594","paper_counts_padj":"0.0087183067268673","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.435643851030884","corrected_median_base_mean":"483.204787597088","corrected_direction_stable":"True","protein_length":"1068.0","replicated_peak_count":"2","both_promoter_peak_count":"1","either_promoter_peak_count":"1","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"20.92931","max_geometric_mean_fold_enrichment":"20.96760995616334","max_overlap_bp":"421.0","replicated_target":"True","both_promoter_target":"True","either_promoter_target":"True","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible promoter-bound candidate"}

search_text:
Ma06_g35010 | 4 | 1 | Cell cycle and microtubules | GO:0003777 | microtubule motor activity;GO:0005874 | microtubule;GO:0007018 | microtubule-based movement;GO:0008017 | microtubule binding | 4 | Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: ATP-dependent microtubule motor activity, plus-end-directed (GO:0008574);;  | Kinesin-like protein KIN-5A | PREDICTED: kinesin-like protein KIN-5A [Musa acuminata subsp. malaccensis] | 1.29402982781656 | 0.379764271875544 | 0.530909681389813 | -0.629946129363289 | -0.576704394211604 | 0.0550942186183432 | -0.447592819607773 | -0.395605121445737 | 0.418958811825465 | -0.467261154547038 | -0.435643851030884 | 0.154953262962074 | -0.59406565278556 | -0.569264115697594 | 0.0087183067268673 | True | True | -0.435643851030884 | 483.204787597088 | True | 1068.0 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 20.92931 | 20.96760995616334 | 421.0 | True | True | True | False | False | False | 1 | False | accessible promoter-bound candidate


record_id: DS004_R00011
dataset_id: DS004
record_json:
{"gene_id":"Ma03_g26540","robust_pathway_count":"1","robust_module_count":"1","modules":"Cell cycle and microtubules","pathways":"GO:0000082 | G1/S transition of mitotic cell cycle","all_three_pathway_count":"1","GO_annotation":"--","Swiss_Prot_annotation":"Cyclin-A2-1","NR_annotation":"PREDICTED: cyclin-A2-1-like [Musa acuminata subsp. malaccensis] ","recovery_log2fc":"0.296845893899977","recovery_shrunk_log2fc":"0.225788944710244","recovery_padj":"0.75819746939255","reciprocal_log2fc":"-0.623770386958098","reciprocal_shrunk_log2fc":"-0.600633919394202","reciprocal_padj":"0.0013096262021227","exclude_pair_log2fc":"-0.59740731400668","exclude_pair_shrunk_log2fc":"-0.548633592374579","exclude_pair_padj":"0.121807495378969","five_traceable_log2fc":"-0.592306693778268","five_traceable_shrunk_log2fc":"-0.569567030721003","five_traceable_padj":"0.0072983759365901","paper_counts_log2fc":"-0.617451987843016","paper_counts_shrunk_log2fc":"-0.609572127613773","paper_counts_padj":"8.52977216524521e-08","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.569567030721003","corrected_median_base_mean":"1005.50220458652","corrected_direction_stable":"True","protein_length":"539.0","replicated_peak_count":"1","both_promoter_peak_count":"1","either_promoter_peak_count":"1","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"1","both_promoter_summit50_motif_peak_count":"1","max_minimum_fold_enrichment":"11.93131","max_geometric_mean_fold_enrichment":"13.524588682296404","max_overlap_bp":"405.0","replicated_target":"True","both_promoter_target":"True","either_promoter_target":"True","replicated_motif_target":"True","both_promoter_motif_target":"True","both_promoter_summit50_motif_target":"True","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible promoter-bound candidate"}

search_text:
Ma03_g26540 | 1 | 1 | Cell cycle and microtubules | GO:0000082 | G1/S transition of mitotic cell cycle | 1 | -- | Cyclin-A2-1 | PREDICTED: cyclin-A2-1-like [Musa acuminata subsp. malaccensis]  | 0.296845893899977 | 0.225788944710244 | 0.75819746939255 | -0.623770386958098 | -0.600633919394202 | 0.0013096262021227 | -0.59740731400668 | -0.548633592374579 | 0.121807495378969 | -0.592306693778268 | -0.569567030721003 | 0.0072983759365901 | -0.617451987843016 | -0.609572127613773 | 8.52977216524521e-08 | True | True | -0.569567030721003 | 1005.50220458652 | True | 539.0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 11.93131 | 13.524588682296404 | 405.0 | True | True | True | True | True | True | 1 | False | accessible promoter-bound candidate


record_id: DS004_R00012
dataset_id: DS004
record_json:
{"gene_id":"Ma10_g04640","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0005730 | nucleolus","all_three_pathway_count":"1","GO_annotation":"--","Swiss_Prot_annotation":"Histone deacetylase HDT1","NR_annotation":"PREDICTED: histone deacetylase HDT2-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.284329372183721","recovery_shrunk_log2fc":"0.217282036527876","recovery_padj":"0.768504997148131","reciprocal_log2fc":"-0.532988847816567","reciprocal_shrunk_log2fc":"-0.512253290092922","reciprocal_padj":"0.0097330306427146","exclude_pair_log2fc":"-0.611150640853887","exclude_pair_shrunk_log2fc":"-0.570218728947493","exclude_pair_padj":"0.066632468597116","five_traceable_log2fc":"-0.631011933584037","five_traceable_shrunk_log2fc":"-0.6145296679322","five_traceable_padj":"0.0002840137684794","paper_counts_log2fc":"-0.673730513398611","paper_counts_shrunk_log2fc":"-0.664305704177283","paper_counts_padj":"2.1769591683907e-08","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.570218728947493","corrected_median_base_mean":"2143.46685232737","corrected_direction_stable":"True","protein_length":"319.0","replicated_peak_count":"2","both_promoter_peak_count":"1","either_promoter_peak_count":"1","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"1","both_promoter_summit50_motif_peak_count":"1","max_minimum_fold_enrichment":"9.17518","max_geometric_mean_fold_enrichment":"9.616439320538554","max_overlap_bp":"1055.0","replicated_target":"True","both_promoter_target":"True","either_promoter_target":"True","replicated_motif_target":"True","both_promoter_motif_target":"True","both_promoter_summit50_motif_target":"True","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible promoter-bound candidate"}

search_text:
Ma10_g04640 | 1 | 1 | RNA and ribosome biogenesis | GO:0005730 | nucleolus | 1 | -- | Histone deacetylase HDT1 | PREDICTED: histone deacetylase HDT2-like [Musa acuminata subsp. malaccensis] | 0.284329372183721 | 0.217282036527876 | 0.768504997148131 | -0.532988847816567 | -0.512253290092922 | 0.0097330306427146 | -0.611150640853887 | -0.570218728947493 | 0.066632468597116 | -0.631011933584037 | -0.6145296679322 | 0.0002840137684794 | -0.673730513398611 | -0.664305704177283 | 2.1769591683907e-08 | True | True | -0.570218728947493 | 2143.46685232737 | True | 319.0 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 9.17518 | 9.616439320538554 | 1055.0 | True | True | True | True | True | True | 1 | False | accessible promoter-bound candidate


record_id: DS004_R00013
dataset_id: DS004
record_json:
{"gene_id":"Ma03_g23580","robust_pathway_count":"1","robust_module_count":"1","modules":"Lipid-ethylene metabolism","pathways":"GO:0009873 | ethylene-activated signaling pathway","all_three_pathway_count":"1","GO_annotation":"--","Swiss_Prot_annotation":"Ethylene-responsive transcription factor ERF110","NR_annotation":"PREDICTED: ethylene-responsive transcription factor ABR1-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-2.4316097955453","recovery_shrunk_log2fc":"-0.558168125315069","recovery_padj":"0.193027938857616","reciprocal_log2fc":"1.85368252450715","reciprocal_shrunk_log2fc":"1.66156342297226","reciprocal_padj":"1.8013378095784e-09","exclude_pair_log2fc":"1.68417489209201","exclude_pair_shrunk_log2fc":"1.40704277484224","exclude_pair_padj":"0.0004861529840652","five_traceable_log2fc":"1.6888867369274","five_traceable_shrunk_log2fc":"1.54802227234644","five_traceable_padj":"2.93963608875362e-08","paper_counts_log2fc":"1.70927190524556","paper_counts_shrunk_log2fc":"1.62864231972239","paper_counts_padj":"8.692957397166971e-15","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"1.54802227234644","corrected_median_base_mean":"130.199680269811","corrected_direction_stable":"True","protein_length":"368.0","replicated_peak_count":"1","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"43.25098","max_geometric_mean_fold_enrichment":"43.33036714247872","max_overlap_bp":"586.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma03_g23580 | 1 | 1 | Lipid-ethylene metabolism | GO:0009873 | ethylene-activated signaling pathway | 1 | -- | Ethylene-responsive transcription factor ERF110 | PREDICTED: ethylene-responsive transcription factor ABR1-like [Musa acuminata subsp. malaccensis] | -2.4316097955453 | -0.558168125315069 | 0.193027938857616 | 1.85368252450715 | 1.66156342297226 | 1.8013378095784e-09 | 1.68417489209201 | 1.40704277484224 | 0.0004861529840652 | 1.6888867369274 | 1.54802227234644 | 2.93963608875362e-08 | 1.70927190524556 | 1.62864231972239 | 8.692957397166971e-15 | True | True | 1.54802227234644 | 130.199680269811 | True | 368.0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 43.25098 | 43.33036714247872 | 586.0 | True | False | False | True | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00014
dataset_id: DS004
record_json:
{"gene_id":"Ma03_g02640","robust_pathway_count":"2","robust_module_count":"1","modules":"Lipid-ethylene metabolism","pathways":"GO:0006631 | fatty acid metabolic process;GO:0006633 | fatty acid biosynthetic process","all_three_pathway_count":"2","GO_annotation":"Molecular Function: FMN binding (GO:0010181);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","Swiss_Prot_annotation":"Putative 12-oxophytodienoate reductase 11","NR_annotation":"PREDICTED: putative 12-oxophytodienoate reductase 11 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-1.36779448872901","recovery_shrunk_log2fc":"-0.767617584156898","recovery_padj":"0.105830567701301","reciprocal_log2fc":"1.15958420581319","reciprocal_shrunk_log2fc":"1.10690341960033","reciprocal_padj":"5.3462192649397305e-09","exclude_pair_log2fc":"1.25953215450983","exclude_pair_shrunk_log2fc":"1.14910716034583","exclude_pair_padj":"0.000155296293865","five_traceable_log2fc":"1.23986557394606","five_traceable_shrunk_log2fc":"1.18914609596319","five_traceable_padj":"2.2337692827818803e-09","paper_counts_log2fc":"1.7656073396341","paper_counts_shrunk_log2fc":"1.71995759957853","paper_counts_padj":"7.833786922863967e-29","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"1.14910716034583","corrected_median_base_mean":"681.162854181916","corrected_direction_stable":"True","protein_length":"415.0","replicated_peak_count":"1","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"13.04987","max_geometric_mean_fold_enrichment":"13.69040510323197","max_overlap_bp":"550.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma03_g02640 | 2 | 1 | Lipid-ethylene metabolism | GO:0006631 | fatty acid metabolic process;GO:0006633 | fatty acid biosynthetic process | 2 | Molecular Function: FMN binding (GO:0010181);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);;  | Putative 12-oxophytodienoate reductase 11 | PREDICTED: putative 12-oxophytodienoate reductase 11 [Musa acuminata subsp. malaccensis] | -1.36779448872901 | -0.767617584156898 | 0.105830567701301 | 1.15958420581319 | 1.10690341960033 | 5.3462192649397305e-09 | 1.25953215450983 | 1.14910716034583 | 0.000155296293865 | 1.23986557394606 | 1.18914609596319 | 2.2337692827818803e-09 | 1.7656073396341 | 1.71995759957853 | 7.833786922863967e-29 | True | True | 1.14910716034583 | 681.162854181916 | True | 415.0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 13.04987 | 13.69040510323197 | 550.0 | True | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00015
dataset_id: DS004
record_json:
{"gene_id":"Ma04_g32520","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0006950 | response to stress","all_three_pathway_count":"0","GO_annotation":"Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein kinase activity (GO:0004672);; Cellular Component: membrane (GO:0016020);; Biological Process: phosphorylation (GO:0016310);; ","Swiss_Prot_annotation":"Phytosulfokine receptor 1","NR_annotation":"PREDICTED: phytosulfokine receptor 1-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-4.79185094471096","recovery_shrunk_log2fc":"-0.150793127651003","recovery_padj":"","reciprocal_log2fc":"1.39857477028249","reciprocal_shrunk_log2fc":"1.11751409580798","reciprocal_padj":"0.005920507338812","exclude_pair_log2fc":"1.45112401225219","exclude_pair_shrunk_log2fc":"1.02407857183633","exclude_pair_padj":"0.070798123492104","five_traceable_log2fc":"1.4287432945773","five_traceable_shrunk_log2fc":"1.1343524918839","five_traceable_padj":"0.0109298650335669","paper_counts_log2fc":"1.55161126275004","paper_counts_shrunk_log2fc":"1.30147884272256","paper_counts_padj":"0.0007848400217552","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"1.11751409580798","corrected_median_base_mean":"80.3974287258017","corrected_direction_stable":"True","protein_length":"1051.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma04_g32520 | 1 | 1 | RNA and ribosome biogenesis | GO:0006950 | response to stress | 0 | Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein kinase activity (GO:0004672);; Cellular Component: membrane (GO:0016020);; Biological Process: phosphorylation (GO:0016310);;  | Phytosulfokine receptor 1 | PREDICTED: phytosulfokine receptor 1-like [Musa acuminata subsp. malaccensis] | -4.79185094471096 | -0.150793127651003 | 1.39857477028249 | 1.11751409580798 | 0.005920507338812 | 1.45112401225219 | 1.02407857183633 | 0.070798123492104 | 1.4287432945773 | 1.1343524918839 | 0.0109298650335669 | 1.55161126275004 | 1.30147884272256 | 0.0007848400217552 | True | True | 1.11751409580798 | 80.3974287258017 | True | 1051.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00016
dataset_id: DS004
record_json:
{"gene_id":"Ma04_g02310","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0006950 | response to stress","all_three_pathway_count":"0","GO_annotation":"--","Swiss_Prot_annotation":"--","NR_annotation":"PREDICTED: uncharacterized protein LOC103980267 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-0.71318505728535","recovery_shrunk_log2fc":"-0.449128816749029","recovery_padj":"0.470362874209993","reciprocal_log2fc":"0.699738084816569","reciprocal_shrunk_log2fc":"0.599489660846435","reciprocal_padj":"0.130248568671012","exclude_pair_log2fc":"1.17051513775992","exclude_pair_shrunk_log2fc":"1.05272986987102","exclude_pair_padj":"0.0016037438909809","five_traceable_log2fc":"1.12540143967968","five_traceable_shrunk_log2fc":"1.05774205591878","five_traceable_padj":"1.82683678547258e-05","paper_counts_log2fc":"1.36274121126421","paper_counts_shrunk_log2fc":"1.3340980257884","paper_counts_padj":"2.15156127927426e-21","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"1.05272986987102","corrected_median_base_mean":"1320.04117153646","corrected_direction_stable":"True","protein_length":"214.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma04_g02310 | 1 | 1 | RNA and ribosome biogenesis | GO:0006950 | response to stress | 0 | -- | -- | PREDICTED: uncharacterized protein LOC103980267 [Musa acuminata subsp. malaccensis] | -0.71318505728535 | -0.449128816749029 | 0.470362874209993 | 0.699738084816569 | 0.599489660846435 | 0.130248568671012 | 1.17051513775992 | 1.05272986987102 | 0.0016037438909809 | 1.12540143967968 | 1.05774205591878 | 1.82683678547258e-05 | 1.36274121126421 | 1.3340980257884 | 2.15156127927426e-21 | True | True | 1.05272986987102 | 1320.04117153646 | True | 214.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00017
dataset_id: DS004
record_json:
{"gene_id":"Ma04_g18960","robust_pathway_count":"1","robust_module_count":"1","modules":"Lipid-ethylene metabolism","pathways":"GO:0006631 | fatty acid metabolic process","all_three_pathway_count":"1","GO_annotation":"Molecular Function: fatty-acyl-CoA binding (GO:0000062);; ","Swiss_Prot_annotation":"Acyl-CoA-binding protein","NR_annotation":"PREDICTED: acyl-CoA-binding protein [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-0.798662764870808","recovery_shrunk_log2fc":"-0.495697956802042","recovery_padj":"0.403464709811116","reciprocal_log2fc":"1.19237612385289","reciprocal_shrunk_log2fc":"1.07819873500484","reciprocal_padj":"0.0001507872149708","exclude_pair_log2fc":"1.13760180733711","exclude_pair_shrunk_log2fc":"1.03172739378767","exclude_pair_padj":"0.0013208908015827","five_traceable_log2fc":"1.0164899167725","five_traceable_shrunk_log2fc":"0.94811366421515","five_traceable_padj":"0.0003606158774197","paper_counts_log2fc":"1.16044421299971","paper_counts_shrunk_log2fc":"1.0918669950092","paper_counts_padj":"6.63290060675495e-06","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"1.03172739378767","corrected_median_base_mean":"1258.54421321672","corrected_direction_stable":"True","protein_length":"90.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma04_g18960 | 1 | 1 | Lipid-ethylene metabolism | GO:0006631 | fatty acid metabolic process | 1 | Molecular Function: fatty-acyl-CoA binding (GO:0000062);;  | Acyl-CoA-binding protein | PREDICTED: acyl-CoA-binding protein [Musa acuminata subsp. malaccensis] | -0.798662764870808 | -0.495697956802042 | 0.403464709811116 | 1.19237612385289 | 1.07819873500484 | 0.0001507872149708 | 1.13760180733711 | 1.03172739378767 | 0.0013208908015827 | 1.0164899167725 | 0.94811366421515 | 0.0003606158774197 | 1.16044421299971 | 1.0918669950092 | 6.63290060675495e-06 | True | True | 1.03172739378767 | 1258.54421321672 | True | 90.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00018
dataset_id: DS004
record_json:
{"gene_id":"Ma01_g15110","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0009086 | methionine biosynthetic process","all_three_pathway_count":"0","GO_annotation":"Molecular Function: catalytic activity (GO:0003824);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; ","Swiss_Prot_annotation":"Cystathionine gamma-synthase 1, chloroplastic","NR_annotation":"PREDICTED: cystathionine gamma-synthase 1, chloroplastic-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-1.6711597981618","recovery_shrunk_log2fc":"-1.00340702900329","recovery_padj":"0.0144622494045124","reciprocal_log2fc":"1.07746704158432","reciprocal_shrunk_log2fc":"1.00211313799797","reciprocal_padj":"3.88853683311485e-05","exclude_pair_log2fc":"0.991515812233055","exclude_pair_shrunk_log2fc":"0.887776407606054","exclude_pair_padj":"0.0124859610025076","five_traceable_log2fc":"1.07057011453274","five_traceable_shrunk_log2fc":"0.993882319377883","five_traceable_padj":"0.0002685659315539","paper_counts_log2fc":"1.11422414776518","paper_counts_shrunk_log2fc":"1.06744463499173","paper_counts_padj":"1.60711159529842e-07","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"0.993882319377883","corrected_median_base_mean":"4147.36314640778","corrected_direction_stable":"True","protein_length":"541.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma01_g15110 | 1 | 1 | RNA and ribosome biogenesis | GO:0009086 | methionine biosynthetic process | 0 | Molecular Function: catalytic activity (GO:0003824);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: pyridoxal phosphate binding (GO:0030170);;  | Cystathionine gamma-synthase 1, chloroplastic | PREDICTED: cystathionine gamma-synthase 1, chloroplastic-like [Musa acuminata subsp. malaccensis] | -1.6711597981618 | -1.00340702900329 | 0.0144622494045124 | 1.07746704158432 | 1.00211313799797 | 3.88853683311485e-05 | 0.991515812233055 | 0.887776407606054 | 0.0124859610025076 | 1.07057011453274 | 0.993882319377883 | 0.0002685659315539 | 1.11422414776518 | 1.06744463499173 | 1.60711159529842e-07 | True | True | 0.993882319377883 | 4147.36314640778 | True | 541.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00019
dataset_id: DS004
record_json:
{"gene_id":"Ma06_g17470","robust_pathway_count":"1","robust_module_count":"1","modules":"Lipid-ethylene metabolism","pathways":"GO:0009873 | ethylene-activated signaling pathway","all_three_pathway_count":"1","GO_annotation":"Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","Swiss_Prot_annotation":"Protein ETHYLENE INSENSITIVE 3","NR_annotation":"PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-2.98253418407737","recovery_shrunk_log2fc":"-0.81847519676075","recovery_padj":"0.0341760124893466","reciprocal_log2fc":"0.950082337943075","reciprocal_shrunk_log2fc":"0.868393878192322","reciprocal_padj":"0.0018261909581709","exclude_pair_log2fc":"1.11148927360967","exclude_pair_shrunk_log2fc":"0.98693003989986","exclude_pair_padj":"0.0060864382420701","five_traceable_log2fc":"1.10305671655414","five_traceable_shrunk_log2fc":"1.02411845577379","five_traceable_padj":"0.0001613580192923","paper_counts_log2fc":"1.25952740201367","paper_counts_shrunk_log2fc":"1.20464704090958","paper_counts_padj":"4.6542313459264705e-09","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"0.98693003989986","corrected_median_base_mean":"2119.74768092779","corrected_direction_stable":"True","protein_length":"635.0","replicated_peak_count":"1","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"10.81275","max_geometric_mean_fold_enrichment":"11.515775288815773","max_overlap_bp":"422.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"2","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma06_g17470 | 1 | 1 | Lipid-ethylene metabolism | GO:0009873 | ethylene-activated signaling pathway | 1 | Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);;  | Protein ETHYLENE INSENSITIVE 3 | PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein [Musa acuminata subsp. malaccensis] | -2.98253418407737 | -0.81847519676075 | 0.0341760124893466 | 0.950082337943075 | 0.868393878192322 | 0.0018261909581709 | 1.11148927360967 | 0.98693003989986 | 0.0060864382420701 | 1.10305671655414 | 1.02411845577379 | 0.0001613580192923 | 1.25952740201367 | 1.20464704090958 | 4.6542313459264705e-09 | True | True | 0.98693003989986 | 2119.74768092779 | True | 635.0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 10.81275 | 11.515775288815773 | 422.0 | True | False | False | False | False | False | 2 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00020
dataset_id: DS004
record_json:
{"gene_id":"Ma05_g04220","robust_pathway_count":"1","robust_module_count":"1","modules":"Lipid-ethylene metabolism","pathways":"GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","all_three_pathway_count":"1","GO_annotation":"Molecular Function: cinnamoyl-CoA reductase activity (GO:0016621);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: oxidation-reduction process (GO:0055114);; ","Swiss_Prot_annotation":"Cinnamoyl-CoA reductase 1","NR_annotation":"PREDICTED: cinnamoyl-CoA reductase 1 isoform X1 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-6.69162997588535","recovery_shrunk_log2fc":"-0.244798884865287","recovery_padj":"0.0366584596736198","reciprocal_log2fc":"0.765295137693328","reciprocal_shrunk_log2fc":"0.72239494469416","reciprocal_padj":"0.0015387315634353","exclude_pair_log2fc":"0.947118451402791","exclude_pair_shrunk_log2fc":"0.870968481359239","exclude_pair_padj":"0.0047270132753007","five_traceable_log2fc":"0.914451176374446","five_traceable_shrunk_log2fc":"0.880779160909523","five_traceable_padj":"5.98894040021833e-06","paper_counts_log2fc":"0.810330366775904","paper_counts_shrunk_log2fc":"0.790469867814396","paper_counts_padj":"5.26939043159508e-07","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"0.870968481359239","corrected_median_base_mean":"974.911388064526","corrected_direction_stable":"True","protein_length":"336.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma05_g04220 | 1 | 1 | Lipid-ethylene metabolism | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 1 | Molecular Function: cinnamoyl-CoA reductase activity (GO:0016621);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: oxidation-reduction process (GO:0055114);;  | Cinnamoyl-CoA reductase 1 | PREDICTED: cinnamoyl-CoA reductase 1 isoform X1 [Musa acuminata subsp. malaccensis] | -6.69162997588535 | -0.244798884865287 | 0.0366584596736198 | 0.765295137693328 | 0.72239494469416 | 0.0015387315634353 | 0.947118451402791 | 0.870968481359239 | 0.0047270132753007 | 0.914451176374446 | 0.880779160909523 | 5.98894040021833e-06 | 0.810330366775904 | 0.790469867814396 | 5.26939043159508e-07 | True | True | 0.870968481359239 | 974.911388064526 | True | 336.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00021
dataset_id: DS004
record_json:
{"gene_id":"Ma06_g12640","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0043169 | cation binding","all_three_pathway_count":"0","GO_annotation":"Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","Swiss_Prot_annotation":"Probable protein phosphatase 2C 78","NR_annotation":"PREDICTED: probable protein phosphatase 2C 78 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-0.428628231614793","recovery_shrunk_log2fc":"-0.368156109376031","recovery_padj":"0.380071154981291","reciprocal_log2fc":"0.783874099834929","reciprocal_shrunk_log2fc":"0.742846070941906","reciprocal_padj":"0.0006688431323217","exclude_pair_log2fc":"0.794855994766269","exclude_pair_shrunk_log2fc":"0.71682788276677","exclude_pair_padj":"0.0494323241349556","five_traceable_log2fc":"0.837042360923521","five_traceable_shrunk_log2fc":"0.793780098627851","five_traceable_padj":"0.0008036433472592","paper_counts_log2fc":"0.882374459039362","paper_counts_shrunk_log2fc":"0.862985763100095","paper_counts_padj":"5.0881645379262e-09","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"0.742846070941906","corrected_median_base_mean":"560.461682185301","corrected_direction_stable":"True","protein_length":"376.0","replicated_peak_count":"1","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"3.75717","max_geometric_mean_fold_enrichment":"4.569363426353829","max_overlap_bp":"293.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma06_g12640 | 1 | 1 | RNA and ribosome biogenesis | GO:0043169 | cation binding | 0 | Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);;  | Probable protein phosphatase 2C 78 | PREDICTED: probable protein phosphatase 2C 78 [Musa acuminata subsp. malaccensis] | -0.428628231614793 | -0.368156109376031 | 0.380071154981291 | 0.783874099834929 | 0.742846070941906 | 0.0006688431323217 | 0.794855994766269 | 0.71682788276677 | 0.0494323241349556 | 0.837042360923521 | 0.793780098627851 | 0.0008036433472592 | 0.882374459039362 | 0.862985763100095 | 5.0881645379262e-09 | True | True | 0.742846070941906 | 560.461682185301 | True | 376.0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 3.75717 | 4.569363426353829 | 293.0 | True | False | False | True | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00022
dataset_id: DS004
record_json:
{"gene_id":"Ma04_g21170","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0006950 | response to stress","all_three_pathway_count":"0","GO_annotation":"--","Swiss_Prot_annotation":"Ethylene-responsive transcription factor ERF105","NR_annotation":"PREDICTED: ethylene-responsive transcription factor ERF105-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-4.13198319427563","recovery_shrunk_log2fc":"-0.137944947099048","recovery_padj":"","reciprocal_log2fc":"1.2978109165797","reciprocal_shrunk_log2fc":"0.774009752647017","reciprocal_padj":"0.168347432416193","exclude_pair_log2fc":"0.802227911247901","exclude_pair_shrunk_log2fc":"0.571613792177954","exclude_pair_padj":"0.404154726086844","five_traceable_log2fc":"0.805339300292592","five_traceable_shrunk_log2fc":"0.672213342793994","five_traceable_padj":"0.132559860182729","paper_counts_log2fc":"0.79155159042555","paper_counts_shrunk_log2fc":"0.681119045109824","paper_counts_padj":"0.0850521408661224","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"0.672213342793994","corrected_median_base_mean":"48.4858700090566","corrected_direction_stable":"True","protein_length":"260.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma04_g21170 | 1 | 1 | RNA and ribosome biogenesis | GO:0006950 | response to stress | 0 | -- | Ethylene-responsive transcription factor ERF105 | PREDICTED: ethylene-responsive transcription factor ERF105-like [Musa acuminata subsp. malaccensis] | -4.13198319427563 | -0.137944947099048 | 1.2978109165797 | 0.774009752647017 | 0.168347432416193 | 0.802227911247901 | 0.571613792177954 | 0.404154726086844 | 0.805339300292592 | 0.672213342793994 | 0.132559860182729 | 0.79155159042555 | 0.681119045109824 | 0.0850521408661224 | True | True | 0.672213342793994 | 48.4858700090566 | True | 260.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00023
dataset_id: DS004
record_json:
{"gene_id":"Ma05_g26900","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0006950 | response to stress","all_three_pathway_count":"0","GO_annotation":"Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: integral component of membrane (GO:0016021);; ","Swiss_Prot_annotation":"Derlin-2.2","NR_annotation":"PREDICTED: derlin-2.2 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"-0.370276228874205","recovery_shrunk_log2fc":"-0.331332846993028","recovery_padj":"0.364293670240824","reciprocal_log2fc":"0.496683750427079","reciprocal_shrunk_log2fc":"0.469188892107462","reciprocal_padj":"0.0582426246896616","exclude_pair_log2fc":"0.656585862008563","exclude_pair_shrunk_log2fc":"0.599549452243906","exclude_pair_padj":"0.0936133010844297","five_traceable_log2fc":"0.628166492129274","five_traceable_shrunk_log2fc":"0.602565669340623","five_traceable_padj":"0.0055277238542142","paper_counts_log2fc":"0.525091754798125","paper_counts_shrunk_log2fc":"0.513218105286208","paper_counts_padj":"0.001118595687128","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"0.599549452243906","corrected_median_base_mean":"651.511422122508","corrected_direction_stable":"True","protein_length":"243.0","replicated_peak_count":"2","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"2","summit50_motif_peak_count":"2","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"5.89597","max_geometric_mean_fold_enrichment":"6.8848944109042085","max_overlap_bp":"331.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma05_g26900 | 1 | 1 | RNA and ribosome biogenesis | GO:0006950 | response to stress | 0 | Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: integral component of membrane (GO:0016021);;  | Derlin-2.2 | PREDICTED: derlin-2.2 [Musa acuminata subsp. malaccensis] | -0.370276228874205 | -0.331332846993028 | 0.364293670240824 | 0.496683750427079 | 0.469188892107462 | 0.0582426246896616 | 0.656585862008563 | 0.599549452243906 | 0.0936133010844297 | 0.628166492129274 | 0.602565669340623 | 0.0055277238542142 | 0.525091754798125 | 0.513218105286208 | 0.001118595687128 | True | True | 0.599549452243906 | 651.511422122508 | True | 243.0 | 2 | 0 | 0 | 2 | 2 | 0 | 0 | 5.89597 | 6.8848944109042085 | 331.0 | True | False | False | True | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00024
dataset_id: DS004
record_json:
{"gene_id":"Ma07_g04010","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0043169 | cation binding","all_three_pathway_count":"0","GO_annotation":"Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; ","Swiss_Prot_annotation":"Probable protein phosphatase 2C 60","NR_annotation":"PREDICTED: probable protein phosphatase 2C 60 [Musa acuminata subsp. malaccensis] ","recovery_log2fc":"-1.058195519719","recovery_shrunk_log2fc":"-0.624971333745489","recovery_padj":"0.232201594329852","reciprocal_log2fc":"0.555227657692378","reciprocal_shrunk_log2fc":"0.539281949074097","reciprocal_padj":"0.0010610067326956","exclude_pair_log2fc":"0.501114958088879","exclude_pair_shrunk_log2fc":"0.466384253036708","exclude_pair_padj":"0.168644835311239","five_traceable_log2fc":"0.51374503720641","five_traceable_shrunk_log2fc":"0.499123472223507","five_traceable_padj":"0.0063737375627502","paper_counts_log2fc":"0.593135625391728","paper_counts_shrunk_log2fc":"0.586854261090291","paper_counts_padj":"1.34908862212291e-08","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"0.499123472223507","corrected_median_base_mean":"2102.59326709266","corrected_direction_stable":"True","protein_length":"388.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma07_g04010 | 1 | 1 | RNA and ribosome biogenesis | GO:0043169 | cation binding | 0 | Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);;  | Probable protein phosphatase 2C 60 | PREDICTED: probable protein phosphatase 2C 60 [Musa acuminata subsp. malaccensis]  | -1.058195519719 | -0.624971333745489 | 0.232201594329852 | 0.555227657692378 | 0.539281949074097 | 0.0010610067326956 | 0.501114958088879 | 0.466384253036708 | 0.168644835311239 | 0.51374503720641 | 0.499123472223507 | 0.0063737375627502 | 0.593135625391728 | 0.586854261090291 | 1.34908862212291e-08 | True | True | 0.499123472223507 | 2102.59326709266 | True | 388.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00025
dataset_id: DS004
record_json:
{"gene_id":"Ma06_g18040","robust_pathway_count":"3","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0005730 | nucleolus;GO:0006364 | rRNA processing;GO:0032040 | small-subunit processome","all_three_pathway_count":"3","GO_annotation":"Biological Process: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: 90S preribosome (GO:0030686);; Cellular Component: small-subunit processome (GO:0032040);; ","Swiss_Prot_annotation":"Katanin p80 WD40 repeat-containing subunit B1 homolog","NR_annotation":"PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.397039423177904","recovery_shrunk_log2fc":"0.305136247899476","recovery_padj":"0.623515579376432","reciprocal_log2fc":"-0.160752890400536","reciprocal_shrunk_log2fc":"-0.156123861734987","reciprocal_padj":"0.472556194668627","exclude_pair_log2fc":"-0.223756951938582","exclude_pair_shrunk_log2fc":"-0.207836967981911","exclude_pair_padj":"0.643442608284997","five_traceable_log2fc":"-0.194436992215467","five_traceable_shrunk_log2fc":"-0.188686266306662","five_traceable_padj":"0.400342018910507","paper_counts_log2fc":"0.218382461928537","paper_counts_shrunk_log2fc":"0.199918898031409","paper_counts_padj":"0.587760703951717","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.188686266306662","corrected_median_base_mean":"1266.75809829682","corrected_direction_stable":"True","protein_length":"532.0","replicated_peak_count":"2","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"2","summit50_motif_peak_count":"2","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"8.20277","max_geometric_mean_fold_enrichment":"10.669591125258735","max_overlap_bp":"485.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma06_g18040 | 3 | 1 | RNA and ribosome biogenesis | GO:0005730 | nucleolus;GO:0006364 | rRNA processing;GO:0032040 | small-subunit processome | 3 | Biological Process: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: 90S preribosome (GO:0030686);; Cellular Component: small-subunit processome (GO:0032040);;  | Katanin p80 WD40 repeat-containing subunit B1 homolog | PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Musa acuminata subsp. malaccensis] | 0.397039423177904 | 0.305136247899476 | 0.623515579376432 | -0.160752890400536 | -0.156123861734987 | 0.472556194668627 | -0.223756951938582 | -0.207836967981911 | 0.643442608284997 | -0.194436992215467 | -0.188686266306662 | 0.400342018910507 | 0.218382461928537 | 0.199918898031409 | 0.587760703951717 | True | True | -0.188686266306662 | 1266.75809829682 | True | 532.0 | 2 | 0 | 0 | 2 | 2 | 0 | 0 | 8.20277 | 10.669591125258735 | 485.0 | True | False | False | True | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00026
dataset_id: DS004
record_json:
{"gene_id":"Ma06_g16140","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0042254 | ribosome biogenesis","all_three_pathway_count":"1","GO_annotation":"Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","Swiss_Prot_annotation":"60S ribosomal protein L34","NR_annotation":"PREDICTED: 60S ribosomal protein L34 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.505880490546239","recovery_shrunk_log2fc":"0.386282596275288","recovery_padj":"0.483225241408415","reciprocal_log2fc":"-0.220478028822292","reciprocal_shrunk_log2fc":"-0.210805123640111","reciprocal_padj":"0.418383689481524","exclude_pair_log2fc":"-0.192204713947583","exclude_pair_shrunk_log2fc":"-0.179089653625796","exclude_pair_padj":"0.691869500341637","five_traceable_log2fc":"-0.289522917130855","five_traceable_shrunk_log2fc":"-0.27789313758166","five_traceable_padj":"0.263138904688089","paper_counts_log2fc":"-0.162064613778201","paper_counts_shrunk_log2fc":"-0.153300451044903","paper_counts_padj":"0.611762667370771","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.210805123640111","corrected_median_base_mean":"1702.09671933653","corrected_direction_stable":"True","protein_length":"120.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"2","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma06_g16140 | 1 | 1 | RNA and ribosome biogenesis | GO:0042254 | ribosome biogenesis | 1 | Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);;  | 60S ribosomal protein L34 | PREDICTED: 60S ribosomal protein L34 [Musa acuminata subsp. malaccensis] | 0.505880490546239 | 0.386282596275288 | 0.483225241408415 | -0.220478028822292 | -0.210805123640111 | 0.418383689481524 | -0.192204713947583 | -0.179089653625796 | 0.691869500341637 | -0.289522917130855 | -0.27789313758166 | 0.263138904688089 | -0.162064613778201 | -0.153300451044903 | 0.611762667370771 | True | True | -0.210805123640111 | 1702.09671933653 | True | 120.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 2 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00027
dataset_id: DS004
record_json:
{"gene_id":"Ma10_g10570","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0005730 | nucleolus","all_three_pathway_count":"1","GO_annotation":"--","Swiss_Prot_annotation":"--","NR_annotation":"PREDICTED: protein MAK16 homolog [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.49946117422341","recovery_shrunk_log2fc":"0.375021843591585","recovery_padj":"0.514018983005111","reciprocal_log2fc":"-0.167007572124276","reciprocal_shrunk_log2fc":"-0.159065794675438","reciprocal_padj":"0.581337357177751","exclude_pair_log2fc":"-0.248524221703342","exclude_pair_shrunk_log2fc":"-0.229430831969288","exclude_pair_padj":"0.613737041454639","five_traceable_log2fc":"-0.276981320602595","five_traceable_shrunk_log2fc":"-0.267953749495988","five_traceable_padj":"0.227297747827505","paper_counts_log2fc":"-0.305689410755903","paper_counts_shrunk_log2fc":"-0.299675459585665","paper_counts_padj":"0.0556339557996707","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.229430831969288","corrected_median_base_mean":"818.23202711505","corrected_direction_stable":"True","protein_length":"305.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma10_g10570 | 1 | 1 | RNA and ribosome biogenesis | GO:0005730 | nucleolus | 1 | -- | -- | PREDICTED: protein MAK16 homolog [Musa acuminata subsp. malaccensis] | 0.49946117422341 | 0.375021843591585 | 0.514018983005111 | -0.167007572124276 | -0.159065794675438 | 0.581337357177751 | -0.248524221703342 | -0.229430831969288 | 0.613737041454639 | -0.276981320602595 | -0.267953749495988 | 0.227297747827505 | -0.305689410755903 | -0.299675459585665 | 0.0556339557996707 | True | True | -0.229430831969288 | 818.23202711505 | True | 305.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00028
dataset_id: DS004
record_json:
{"gene_id":"Ma11_g05420","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0005730 | nucleolus","all_three_pathway_count":"1","GO_annotation":"--","Swiss_Prot_annotation":"--","NR_annotation":"PREDICTED: protein KRI1 homolog [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.721734302425546","recovery_shrunk_log2fc":"0.262439350639953","recovery_padj":"0.747455519313261","reciprocal_log2fc":"-0.204761146933085","reciprocal_shrunk_log2fc":"-0.196673427064748","reciprocal_padj":"0.428765730618947","exclude_pair_log2fc":"-0.261441690036027","exclude_pair_shrunk_log2fc":"-0.238771170786125","exclude_pair_padj":"0.620881404734153","five_traceable_log2fc":"-0.259684850869858","five_traceable_shrunk_log2fc":"-0.24977046575388","five_traceable_padj":"0.309978712903524","paper_counts_log2fc":"-0.262182253468857","paper_counts_shrunk_log2fc":"-0.253470539158324","paper_counts_padj":"0.238317871954148","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.238771170786125","corrected_median_base_mean":"538.239374930064","corrected_direction_stable":"True","protein_length":"611.0","replicated_peak_count":"1","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"4.28781","max_geometric_mean_fold_enrichment":"4.631449766574177","max_overlap_bp":"248.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma11_g05420 | 1 | 1 | RNA and ribosome biogenesis | GO:0005730 | nucleolus | 1 | -- | -- | PREDICTED: protein KRI1 homolog [Musa acuminata subsp. malaccensis] | 0.721734302425546 | 0.262439350639953 | 0.747455519313261 | -0.204761146933085 | -0.196673427064748 | 0.428765730618947 | -0.261441690036027 | -0.238771170786125 | 0.620881404734153 | -0.259684850869858 | -0.24977046575388 | 0.309978712903524 | -0.262182253468857 | -0.253470539158324 | 0.238317871954148 | True | True | -0.238771170786125 | 538.239374930064 | True | 611.0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 4.28781 | 4.631449766574177 | 248.0 | True | False | False | True | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00029
dataset_id: DS004
record_json:
{"gene_id":"Ma09_g04060","robust_pathway_count":"3","robust_module_count":"1","modules":"Cell cycle and microtubules","pathways":"GO:0003777 | microtubule motor activity;GO:0007018 | microtubule-based movement;GO:0008017 | microtubule binding","all_three_pathway_count":"3","GO_annotation":"Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: ATP-dependent microtubule motor activity, plus-end-directed (GO:0008574);; ","Swiss_Prot_annotation":"Kinesin-like protein KIN-5A","NR_annotation":"PREDICTED: kinesin-like protein KIN-5A [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.780236518585081","recovery_shrunk_log2fc":"0.683426654310771","recovery_padj":"0.0134229363322445","reciprocal_log2fc":"-0.4208622880104","reciprocal_shrunk_log2fc":"-0.393840280577533","reciprocal_padj":"0.161842063861719","exclude_pair_log2fc":"-0.314993037783233","exclude_pair_shrunk_log2fc":"-0.286879431981223","exclude_pair_padj":"0.536689435609126","five_traceable_log2fc":"-0.291098676491502","five_traceable_shrunk_log2fc":"-0.276049495195277","five_traceable_padj":"0.336117220073399","paper_counts_log2fc":"-0.355963716803381","paper_counts_shrunk_log2fc":"-0.344779369451998","paper_counts_padj":"0.0834701380131521","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.286879431981223","corrected_median_base_mean":"4981.47403605185","corrected_direction_stable":"True","protein_length":"1049.0","replicated_peak_count":"1","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"4.61107","max_geometric_mean_fold_enrichment":"4.955370819282852","max_overlap_bp":"287.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma09_g04060 | 3 | 1 | Cell cycle and microtubules | GO:0003777 | microtubule motor activity;GO:0007018 | microtubule-based movement;GO:0008017 | microtubule binding | 3 | Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: ATP-dependent microtubule motor activity, plus-end-directed (GO:0008574);;  | Kinesin-like protein KIN-5A | PREDICTED: kinesin-like protein KIN-5A [Musa acuminata subsp. malaccensis] | 0.780236518585081 | 0.683426654310771 | 0.0134229363322445 | -0.4208622880104 | -0.393840280577533 | 0.161842063861719 | -0.314993037783233 | -0.286879431981223 | 0.536689435609126 | -0.291098676491502 | -0.276049495195277 | 0.336117220073399 | -0.355963716803381 | -0.344779369451998 | 0.0834701380131521 | True | True | -0.286879431981223 | 4981.47403605185 | True | 1049.0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 4.61107 | 4.955370819282852 | 287.0 | True | False | False | True | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00030
dataset_id: DS004
record_json:
{"gene_id":"Ma03_g11380","robust_pathway_count":"4","robust_module_count":"1","modules":"Cell cycle and microtubules","pathways":"GO:0003777 | microtubule motor activity;GO:0005874 | microtubule;GO:0007018 | microtubule-based movement;GO:0008017 | microtubule binding","all_three_pathway_count":"4","GO_annotation":"Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: oxidation-reduction process (GO:0055114);; ","Swiss_Prot_annotation":"Kinesin-like protein KIN-14I","NR_annotation":"PREDICTED: kinesin-like calmodulin-binding protein homolog isoform X2 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"1.56567090085074","recovery_shrunk_log2fc":"0.366282490589458","recovery_padj":"0.508329647471359","reciprocal_log2fc":"-0.356972033430448","reciprocal_shrunk_log2fc":"-0.347209575958207","reciprocal_padj":"0.0476788915147852","exclude_pair_log2fc":"-0.340324709523687","exclude_pair_shrunk_log2fc":"-0.317337466299114","exclude_pair_padj":"0.404103796702263","five_traceable_log2fc":"-0.327807384657258","five_traceable_shrunk_log2fc":"-0.318549300133747","five_traceable_padj":"0.107513821804724","paper_counts_log2fc":"-0.262722624864538","paper_counts_shrunk_log2fc":"-0.259073951592965","paper_counts_padj":"0.0486632404735305","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.318549300133747","corrected_median_base_mean":"3749.33281182574","corrected_direction_stable":"True","protein_length":"1335.0","replicated_peak_count":"3","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"3","summit50_motif_peak_count":"3","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"13.92752","max_geometric_mean_fold_enrichment":"15.606266566581514","max_overlap_bp":"624.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma03_g11380 | 4 | 1 | Cell cycle and microtubules | GO:0003777 | microtubule motor activity;GO:0005874 | microtubule;GO:0007018 | microtubule-based movement;GO:0008017 | microtubule binding | 4 | Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: oxidation-reduction process (GO:0055114);;  | Kinesin-like protein KIN-14I | PREDICTED: kinesin-like calmodulin-binding protein homolog isoform X2 [Musa acuminata subsp. malaccensis] | 1.56567090085074 | 0.366282490589458 | 0.508329647471359 | -0.356972033430448 | -0.347209575958207 | 0.0476788915147852 | -0.340324709523687 | -0.317337466299114 | 0.404103796702263 | -0.327807384657258 | -0.318549300133747 | 0.107513821804724 | -0.262722624864538 | -0.259073951592965 | 0.0486632404735305 | True | True | -0.318549300133747 | 3749.33281182574 | True | 1335.0 | 3 | 0 | 0 | 3 | 3 | 0 | 0 | 13.92752 | 15.606266566581514 | 624.0 | True | False | False | True | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00031
dataset_id: DS004
record_json:
{"gene_id":"Ma09_g08090","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0008033 | tRNA processing","all_three_pathway_count":"1","GO_annotation":"Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: tRNA modification (GO:0006400);; Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; Biological Process: 2-methylguanosine metabolic process (GO:0080180);; ","Swiss_Prot_annotation":"--","NR_annotation":"PREDICTED: tRNA (guanine(10)-N2)-methyltransferase homolog [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.874404180436736","recovery_shrunk_log2fc":"0.394973001107913","recovery_padj":"0.566494747257707","reciprocal_log2fc":"-0.425007468224294","reciprocal_shrunk_log2fc":"-0.38732221227436","reciprocal_padj":"0.253208073410988","exclude_pair_log2fc":"-0.387645840762618","exclude_pair_shrunk_log2fc":"-0.343345588371253","exclude_pair_padj":"0.497840722561368","five_traceable_log2fc":"-0.292960465330095","five_traceable_shrunk_log2fc":"-0.269970911451572","five_traceable_padj":"0.456338509906023","paper_counts_log2fc":"-0.410301613482863","paper_counts_shrunk_log2fc":"-0.39241223183053","paper_counts_padj":"0.093463409044682","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.343345588371253","corrected_median_base_mean":"929.248101235688","corrected_direction_stable":"True","protein_length":"487.0","replicated_peak_count":"1","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"4.47424","max_geometric_mean_fold_enrichment":"4.496315540528712","max_overlap_bp":"275.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma09_g08090 | 1 | 1 | RNA and ribosome biogenesis | GO:0008033 | tRNA processing | 1 | Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: tRNA modification (GO:0006400);; Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; Biological Process: 2-methylguanosine metabolic process (GO:0080180);;  | -- | PREDICTED: tRNA (guanine(10)-N2)-methyltransferase homolog [Musa acuminata subsp. malaccensis] | 0.874404180436736 | 0.394973001107913 | 0.566494747257707 | -0.425007468224294 | -0.38732221227436 | 0.253208073410988 | -0.387645840762618 | -0.343345588371253 | 0.497840722561368 | -0.292960465330095 | -0.269970911451572 | 0.456338509906023 | -0.410301613482863 | -0.39241223183053 | 0.093463409044682 | True | True | -0.343345588371253 | 929.248101235688 | True | 487.0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 4.47424 | 4.496315540528712 | 275.0 | True | False | False | True | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00032
dataset_id: DS004
record_json:
{"gene_id":"Ma06_g01770","robust_pathway_count":"4","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0005730 | nucleolus;GO:0006364 | rRNA processing;GO:0032040 | small-subunit processome;GO:0042254 | ribosome biogenesis","all_three_pathway_count":"4","GO_annotation":"Cellular Component: nucleolus (GO:0005730);; Biological Process: maturation of SSU-rRNA (GO:0030490);; Cellular Component: Noc4p-Nop14p complex (GO:0030692);; Cellular Component: small-subunit processome (GO:0032040);; ","Swiss_Prot_annotation":"--","NR_annotation":"PREDICTED: nucleolar protein 14 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.792856508072072","recovery_shrunk_log2fc":"0.631620908586281","recovery_padj":"0.100070319242012","reciprocal_log2fc":"-0.394766091762251","reciprocal_shrunk_log2fc":"-0.375798207039508","reciprocal_padj":"0.118096962143751","exclude_pair_log2fc":"-0.469200620268141","exclude_pair_shrunk_log2fc":"-0.428574573818908","exclude_pair_padj":"0.283911616043234","five_traceable_log2fc":"-0.439562339106986","five_traceable_shrunk_log2fc":"-0.418450546946491","five_traceable_padj":"0.100414621707578","paper_counts_log2fc":"-0.475589621175697","paper_counts_shrunk_log2fc":"-0.467728920365358","paper_counts_padj":"0.0004907160474102","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.418450546946491","corrected_median_base_mean":"2077.49735414972","corrected_direction_stable":"True","protein_length":"847.0","replicated_peak_count":"1","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"5.5928","max_geometric_mean_fold_enrichment":"6.784502270911257","max_overlap_bp":"282.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma06_g01770 | 4 | 1 | RNA and ribosome biogenesis | GO:0005730 | nucleolus;GO:0006364 | rRNA processing;GO:0032040 | small-subunit processome;GO:0042254 | ribosome biogenesis | 4 | Cellular Component: nucleolus (GO:0005730);; Biological Process: maturation of SSU-rRNA (GO:0030490);; Cellular Component: Noc4p-Nop14p complex (GO:0030692);; Cellular Component: small-subunit processome (GO:0032040);;  | -- | PREDICTED: nucleolar protein 14 [Musa acuminata subsp. malaccensis] | 0.792856508072072 | 0.631620908586281 | 0.100070319242012 | -0.394766091762251 | -0.375798207039508 | 0.118096962143751 | -0.469200620268141 | -0.428574573818908 | 0.283911616043234 | -0.439562339106986 | -0.418450546946491 | 0.100414621707578 | -0.475589621175697 | -0.467728920365358 | 0.0004907160474102 | True | True | -0.418450546946491 | 2077.49735414972 | True | 847.0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 5.5928 | 6.784502270911257 | 282.0 | True | False | False | True | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00033
dataset_id: DS004
record_json:
{"gene_id":"Ma08_g19570","robust_pathway_count":"2","robust_module_count":"1","modules":"Cell cycle and microtubules","pathways":"GO:0005874 | microtubule;GO:0008017 | microtubule binding","all_three_pathway_count":"2","GO_annotation":"--","Swiss_Prot_annotation":"Protein TPX2","NR_annotation":"PREDICTED: protein TPX2-like isoform X5 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"1.68425166305889","recovery_shrunk_log2fc":"0.505359922659774","recovery_padj":"0.339381279432193","reciprocal_log2fc":"-0.465655480216667","reciprocal_shrunk_log2fc":"-0.431642180535053","reciprocal_padj":"0.145457541764418","exclude_pair_log2fc":"-0.544935870358193","exclude_pair_shrunk_log2fc":"-0.485201951522962","exclude_pair_padj":"0.271500778308165","five_traceable_log2fc":"-0.469041129050102","five_traceable_shrunk_log2fc":"-0.434014901736489","five_traceable_padj":"0.179557324489017","paper_counts_log2fc":"-0.406383920964655","paper_counts_shrunk_log2fc":"-0.380012868945351","paper_counts_padj":"0.191663197291223","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.434014901736489","corrected_median_base_mean":"2333.35758241976","corrected_direction_stable":"True","protein_length":"813.0","replicated_peak_count":"1","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"5.97088","max_geometric_mean_fold_enrichment":"6.060802870115476","max_overlap_bp":"296.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"2","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma08_g19570 | 2 | 1 | Cell cycle and microtubules | GO:0005874 | microtubule;GO:0008017 | microtubule binding | 2 | -- | Protein TPX2 | PREDICTED: protein TPX2-like isoform X5 [Musa acuminata subsp. malaccensis] | 1.68425166305889 | 0.505359922659774 | 0.339381279432193 | -0.465655480216667 | -0.431642180535053 | 0.145457541764418 | -0.544935870358193 | -0.485201951522962 | 0.271500778308165 | -0.469041129050102 | -0.434014901736489 | 0.179557324489017 | -0.406383920964655 | -0.380012868945351 | 0.191663197291223 | True | True | -0.434014901736489 | 2333.35758241976 | True | 813.0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 5.97088 | 6.060802870115476 | 296.0 | True | False | False | True | False | False | 2 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00034
dataset_id: DS004
record_json:
{"gene_id":"Ma06_g04260","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0006353 | DNA-templated transcription termination","all_three_pathway_count":"0","GO_annotation":"Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; ","Swiss_Prot_annotation":"Transcription termination factor MTEF1, chloroplastic","NR_annotation":"PREDICTED: uncharacterized protein LOC103988199 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"1.14160334276083","recovery_shrunk_log2fc":"0.212891347853705","recovery_padj":"0.747300643758481","reciprocal_log2fc":"-0.623256131722983","reciprocal_shrunk_log2fc":"-0.486740080747595","reciprocal_padj":"0.337625217002447","exclude_pair_log2fc":"-0.627231208312746","exclude_pair_shrunk_log2fc":"-0.44133988373572","exclude_pair_padj":"0.556413356016341","five_traceable_log2fc":"-0.784113957981202","five_traceable_shrunk_log2fc":"-0.621750193479415","five_traceable_padj":"0.218810043785923","paper_counts_log2fc":"2.4208861301855","paper_counts_shrunk_log2fc":"1.2185938900727","paper_counts_padj":"0.0260763313388545","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.486740080747595","corrected_median_base_mean":"51.8478394690434","corrected_direction_stable":"True","protein_length":"241.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma06_g04260 | 1 | 1 | RNA and ribosome biogenesis | GO:0006353 | DNA-templated transcription termination | 0 | Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);;  | Transcription termination factor MTEF1, chloroplastic | PREDICTED: uncharacterized protein LOC103988199 [Musa acuminata subsp. malaccensis] | 1.14160334276083 | 0.212891347853705 | 0.747300643758481 | -0.623256131722983 | -0.486740080747595 | 0.337625217002447 | -0.627231208312746 | -0.44133988373572 | 0.556413356016341 | -0.784113957981202 | -0.621750193479415 | 0.218810043785923 | 2.4208861301855 | 1.2185938900727 | 0.0260763313388545 | True | True | -0.486740080747595 | 51.8478394690434 | True | 241.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00035
dataset_id: DS004
record_json:
{"gene_id":"Ma04_g26240","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0005730 | nucleolus","all_three_pathway_count":"1","GO_annotation":"Molecular Function: RNA binding (GO:0003723);; Molecular Function: ATP-dependent RNA helicase activity (GO:0004004);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: plastid (GO:0009536);; Biological Process: RNA secondary structure unwinding (GO:0010501);; ","Swiss_Prot_annotation":"DEAD-box ATP-dependent RNA helicase 7","NR_annotation":"PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.261481030295603","recovery_shrunk_log2fc":"0.22709491737996","recovery_padj":"0.663151266261406","reciprocal_log2fc":"-0.413857981560515","reciprocal_shrunk_log2fc":"-0.391256223927297","reciprocal_padj":"0.127354526646015","exclude_pair_log2fc":"-0.589658105327733","exclude_pair_shrunk_log2fc":"-0.550439878001226","exclude_pair_padj":"0.0785817783477899","five_traceable_log2fc":"-0.553203812971474","five_traceable_shrunk_log2fc":"-0.536589507427619","five_traceable_padj":"0.0040704639420783","paper_counts_log2fc":"-0.563055783882432","paper_counts_shrunk_log2fc":"-0.554340322282082","paper_counts_padj":"1.33171343675557e-05","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.536589507427619","corrected_median_base_mean":"7103.42998027097","corrected_direction_stable":"True","protein_length":"716.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma04_g26240 | 1 | 1 | RNA and ribosome biogenesis | GO:0005730 | nucleolus | 1 | Molecular Function: RNA binding (GO:0003723);; Molecular Function: ATP-dependent RNA helicase activity (GO:0004004);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: plastid (GO:0009536);; Biological Process: RNA secondary structure unwinding (GO:0010501);;  | DEAD-box ATP-dependent RNA helicase 7 | PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Musa acuminata subsp. malaccensis] | 0.261481030295603 | 0.22709491737996 | 0.663151266261406 | -0.413857981560515 | -0.391256223927297 | 0.127354526646015 | -0.589658105327733 | -0.550439878001226 | 0.0785817783477899 | -0.553203812971474 | -0.536589507427619 | 0.0040704639420783 | -0.563055783882432 | -0.554340322282082 | 1.33171343675557e-05 | True | True | -0.536589507427619 | 7103.42998027097 | True | 716.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00036
dataset_id: DS004
record_json:
{"gene_id":"Ma03_g07360","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0005730 | nucleolus","all_three_pathway_count":"1","GO_annotation":"--","Swiss_Prot_annotation":"Nucleolar complex protein 2 homolog","NR_annotation":"PREDICTED: nucleolar complex protein 2 homolog [Musa acuminata subsp. malaccensis] ","recovery_log2fc":"0.656680127893952","recovery_shrunk_log2fc":"0.47615808126601","recovery_padj":"0.373044672092657","reciprocal_log2fc":"-0.449613716573052","reciprocal_shrunk_log2fc":"-0.42105087254049","reciprocal_padj":"0.126290710395657","exclude_pair_log2fc":"-0.589870731189363","exclude_pair_shrunk_log2fc":"-0.53696093968224","exclude_pair_padj":"0.155862040396108","five_traceable_log2fc":"-0.574511949560054","five_traceable_shrunk_log2fc":"-0.54728555806248","five_traceable_padj":"0.0229302580920166","paper_counts_log2fc":"-0.553642579538617","paper_counts_shrunk_log2fc":"-0.541149524567488","paper_counts_padj":"0.0005414023739437","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.53696093968224","corrected_median_base_mean":"963.863661325947","corrected_direction_stable":"True","protein_length":"759.0","replicated_peak_count":"3","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"3","summit50_motif_peak_count":"3","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"5.40637","max_geometric_mean_fold_enrichment":"5.757882634484659","max_overlap_bp":"619.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma03_g07360 | 1 | 1 | RNA and ribosome biogenesis | GO:0005730 | nucleolus | 1 | -- | Nucleolar complex protein 2 homolog | PREDICTED: nucleolar complex protein 2 homolog [Musa acuminata subsp. malaccensis]  | 0.656680127893952 | 0.47615808126601 | 0.373044672092657 | -0.449613716573052 | -0.42105087254049 | 0.126290710395657 | -0.589870731189363 | -0.53696093968224 | 0.155862040396108 | -0.574511949560054 | -0.54728555806248 | 0.0229302580920166 | -0.553642579538617 | -0.541149524567488 | 0.0005414023739437 | True | True | -0.53696093968224 | 963.863661325947 | True | 759.0 | 3 | 0 | 0 | 3 | 3 | 0 | 0 | 5.40637 | 5.757882634484659 | 619.0 | True | False | False | True | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00037
dataset_id: DS004
record_json:
{"gene_id":"Ma08_g23470","robust_pathway_count":"2","robust_module_count":"1","modules":"Cell cycle and microtubules","pathways":"GO:0000278 | mitotic cell cycle;GO:0005874 | microtubule","all_three_pathway_count":"2","GO_annotation":"Cellular Component: spindle pole (GO:0000922);; Cellular Component: equatorial microtubule organizing center (GO:0000923);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Cellular Component: nuclear envelope (GO:0005635);; Cellular Component: centrosome (GO:0005813);; Cellular Component: spindle pole body (GO:0005816);; Biological Process: meiotic cell cycle (GO:0007126);; Cellular Component: gamma-tubulin small complex (GO:0008275);; Biological Process: response to nematode (GO:0009624);; Cellular Component: cytoplasmic side of plasma membrane (GO:0009898);; Biological Process: cytoplasmic microtubule organization (GO:0031122);; Molecular Function: gamma-tubulin binding (GO:0043015);; Molecular Function: microtubule minus-end binding (GO:0051011);; Biological Process: centrosome duplication (GO:0051298);; Biological Process: interphase microtubule nucleation by interphase microtubule organizing center (GO:0051415);; Cellular Component: cortical microtubule (GO:0055028);; Biological Process: positive regulation of microtubule nucleation (GO:0090063);; Biological Process: mitotic spindle assembly (GO:0090307);; ","Swiss_Prot_annotation":"Gamma-tubulin complex component 3","NR_annotation":"PREDICTED: gamma-tubulin complex component 3-like [Musa acuminata subsp. malaccensis] ","recovery_log2fc":"0.673882665046582","recovery_shrunk_log2fc":"0.246153051746763","recovery_padj":"0.768960643353785","reciprocal_log2fc":"-0.553230585017102","reciprocal_shrunk_log2fc":"-0.527291482080692","reciprocal_padj":"0.0161133833366601","exclude_pair_log2fc":"-0.667444728250227","exclude_pair_shrunk_log2fc":"-0.610174800646821","exclude_pair_padj":"0.0841704544270767","five_traceable_log2fc":"-0.579610319433116","five_traceable_shrunk_log2fc":"-0.551401282177949","five_traceable_padj":"0.0237672291126547","paper_counts_log2fc":"-0.487235937716206","paper_counts_shrunk_log2fc":"-0.474090072760714","paper_counts_padj":"0.0067682955148501","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.551401282177949","corrected_median_base_mean":"673.043571693479","corrected_direction_stable":"True","protein_length":"833.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma08_g23470 | 2 | 1 | Cell cycle and microtubules | GO:0000278 | mitotic cell cycle;GO:0005874 | microtubule | 2 | Cellular Component: spindle pole (GO:0000922);; Cellular Component: equatorial microtubule organizing center (GO:0000923);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Cellular Component: nuclear envelope (GO:0005635);; Cellular Component: centrosome (GO:0005813);; Cellular Component: spindle pole body (GO:0005816);; Biological Process: meiotic cell cycle (GO:0007126);; Cellular Component: gamma-tubulin small complex (GO:0008275);; Biological Process: response to nematode (GO:0009624);; Cellular Component: cytoplasmic side of plasma membrane (GO:0009898);; Biological Process: cytoplasmic microtubule organization (GO:0031122);; Molecular Function: gamma-tubulin binding (GO:0043015);; Molecular Function: microtubule minus-end binding (GO:0051011);; Biological Process: centrosome duplication (GO:0051298);; Biological Process: interphase microtubule nucleation by interphase microtubule organizing center (GO:0051415);; Cellular Component: cortical microtubule (GO:0055028);; Biological Process: positive regulation of microtubule nucleation (GO:0090063);; Biological Process: mitotic spindle assembly (GO:0090307);;  | Gamma-tubulin complex component 3 | PREDICTED: gamma-tubulin complex component 3-like [Musa acuminata subsp. malaccensis]  | 0.673882665046582 | 0.246153051746763 | 0.768960643353785 | -0.553230585017102 | -0.527291482080692 | 0.0161133833366601 | -0.667444728250227 | -0.610174800646821 | 0.0841704544270767 | -0.579610319433116 | -0.551401282177949 | 0.0237672291126547 | -0.487235937716206 | -0.474090072760714 | 0.0067682955148501 | True | True | -0.551401282177949 | 673.043571693479 | True | 833.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00038
dataset_id: DS004
record_json:
{"gene_id":"Ma11_g16190","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0001522 | pseudouridine synthesis","all_three_pathway_count":"1","GO_annotation":"Biological Process: box H/ACA snoRNA 3'-end processing (GO:0000495);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: pseudouridine synthase activity (GO:0009982);; Biological Process: rRNA pseudouridine synthesis (GO:0031118);; Biological Process: snRNA pseudouridine synthesis (GO:0031120);; Cellular Component: box H/ACA snoRNP complex (GO:0031429);; Biological Process: mRNA pseudouridine synthesis (GO:1990481);; ","Swiss_Prot_annotation":"H/ACA ribonucleoprotein complex subunit 4","NR_annotation":"PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"1.1547569841787","recovery_shrunk_log2fc":"0.886170051510524","recovery_padj":"0.0119611544254275","reciprocal_log2fc":"-0.726674233637608","reciprocal_shrunk_log2fc":"-0.669994647034809","reciprocal_padj":"0.0159600787808072","exclude_pair_log2fc":"-0.886183220793198","exclude_pair_shrunk_log2fc":"-0.814892192564513","exclude_pair_padj":"0.009366426387739","five_traceable_log2fc":"-0.909666082222478","five_traceable_shrunk_log2fc":"-0.875194947476846","five_traceable_padj":"1.01759099605245e-05","paper_counts_log2fc":"-1.04172402119514","paper_counts_shrunk_log2fc":"-0.996682703600943","paper_counts_padj":"1.65256364002433e-06","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.814892192564513","corrected_median_base_mean":"1026.44057337862","corrected_direction_stable":"True","protein_length":"637.0","replicated_peak_count":"1","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"1","summit50_motif_peak_count":"1","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"21.7249","max_geometric_mean_fold_enrichment":"23.69184283805293","max_overlap_bp":"569.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma11_g16190 | 1 | 1 | RNA and ribosome biogenesis | GO:0001522 | pseudouridine synthesis | 1 | Biological Process: box H/ACA snoRNA 3'-end processing (GO:0000495);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: pseudouridine synthase activity (GO:0009982);; Biological Process: rRNA pseudouridine synthesis (GO:0031118);; Biological Process: snRNA pseudouridine synthesis (GO:0031120);; Cellular Component: box H/ACA snoRNP complex (GO:0031429);; Biological Process: mRNA pseudouridine synthesis (GO:1990481);;  | H/ACA ribonucleoprotein complex subunit 4 | PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Musa acuminata subsp. malaccensis] | 1.1547569841787 | 0.886170051510524 | 0.0119611544254275 | -0.726674233637608 | -0.669994647034809 | 0.0159600787808072 | -0.886183220793198 | -0.814892192564513 | 0.009366426387739 | -0.909666082222478 | -0.875194947476846 | 1.01759099605245e-05 | -1.04172402119514 | -0.996682703600943 | 1.65256364002433e-06 | True | True | -0.814892192564513 | 1026.44057337862 | True | 637.0 | 1 | 0 | 0 | 1 | 1 | 0 | 0 | 21.7249 | 23.69184283805293 | 569.0 | True | False | False | True | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00039
dataset_id: DS004
record_json:
{"gene_id":"Ma03_g08350","robust_pathway_count":"1","robust_module_count":"1","modules":"RNA and ribosome biogenesis","pathways":"GO:0008033 | tRNA processing","all_three_pathway_count":"1","GO_annotation":"Molecular Function: tRNA (adenine-N1-)-methyltransferase activity (GO:0016429);; Biological Process: tRNA methylation (GO:0030488);; Cellular Component: tRNA (m1A) methyltransferase complex (GO:0031515);; ","Swiss_Prot_annotation":"--","NR_annotation":"PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Musa acuminata subsp. malaccensis]","recovery_log2fc":"1.16736331873123","recovery_shrunk_log2fc":"0.567899874971757","recovery_padj":"0.320553910069515","reciprocal_log2fc":"-0.957210295804645","reciprocal_shrunk_log2fc":"-0.785328817881202","reciprocal_padj":"0.0590557803220227","exclude_pair_log2fc":"-1.14234040012273","exclude_pair_shrunk_log2fc":"-0.926083105752474","exclude_pair_padj":"0.0549660221267963","five_traceable_log2fc":"-1.20139436405466","five_traceable_shrunk_log2fc":"-1.05094095604884","five_traceable_padj":"0.0038128922461732","paper_counts_log2fc":"-1.2075803260652","paper_counts_shrunk_log2fc":"-1.14480293172753","paper_counts_padj":"4.18018636189517e-07","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.926083105752474","corrected_median_base_mean":"140.394205325318","corrected_direction_stable":"True","protein_length":"313.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma03_g08350 | 1 | 1 | RNA and ribosome biogenesis | GO:0008033 | tRNA processing | 1 | Molecular Function: tRNA (adenine-N1-)-methyltransferase activity (GO:0016429);; Biological Process: tRNA methylation (GO:0030488);; Cellular Component: tRNA (m1A) methyltransferase complex (GO:0031515);;  | -- | PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Musa acuminata subsp. malaccensis] | 1.16736331873123 | 0.567899874971757 | 0.320553910069515 | -0.957210295804645 | -0.785328817881202 | 0.0590557803220227 | -1.14234040012273 | -0.926083105752474 | 0.0549660221267963 | -1.20139436405466 | -1.05094095604884 | 0.0038128922461732 | -1.2075803260652 | -1.14480293172753 | 4.18018636189517e-07 | True | True | -0.926083105752474 | 140.394205325318 | True | 313.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00040
dataset_id: DS004
record_json:
{"gene_id":"Ma04_g07080","robust_pathway_count":"1","robust_module_count":"1","modules":"Cell cycle and microtubules","pathways":"GO:0000082 | G1/S transition of mitotic cell cycle","all_three_pathway_count":"1","GO_annotation":"Cellular Component: nucleus (GO:0005634);; ","Swiss_Prot_annotation":"Cyclin-D5-3","NR_annotation":"PREDICTED: cyclin-D5-3-like isoform X1 [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.687707351240529","recovery_shrunk_log2fc":"0.180981625054645","recovery_padj":"0.830749225525096","reciprocal_log2fc":"-1.22585601812976","reciprocal_shrunk_log2fc":"-0.926767520340272","reciprocal_padj":"0.0438930089332568","exclude_pair_log2fc":"-1.26037248710568","exclude_pair_shrunk_log2fc":"-0.992133730677607","exclude_pair_padj":"0.047597318498107","five_traceable_log2fc":"-1.49465565409277","five_traceable_shrunk_log2fc":"-1.20522760377458","five_traceable_padj":"0.0059708573896019","paper_counts_log2fc":"-1.42053032269852","paper_counts_shrunk_log2fc":"-1.05088186634389","paper_counts_padj":"0.0307165359523118","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-0.992133730677607","corrected_median_base_mean":"200.089459889627","corrected_direction_stable":"True","protein_length":"349.0","replicated_peak_count":"1","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"1","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"4.03438","max_geometric_mean_fold_enrichment":"4.750103205615642","max_overlap_bp":"272.0","replicated_target":"True","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"True","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma04_g07080 | 1 | 1 | Cell cycle and microtubules | GO:0000082 | G1/S transition of mitotic cell cycle | 1 | Cellular Component: nucleus (GO:0005634);;  | Cyclin-D5-3 | PREDICTED: cyclin-D5-3-like isoform X1 [Musa acuminata subsp. malaccensis] | 0.687707351240529 | 0.180981625054645 | 0.830749225525096 | -1.22585601812976 | -0.926767520340272 | 0.0438930089332568 | -1.26037248710568 | -0.992133730677607 | 0.047597318498107 | -1.49465565409277 | -1.20522760377458 | 0.0059708573896019 | -1.42053032269852 | -1.05088186634389 | 0.0307165359523118 | True | True | -0.992133730677607 | 200.089459889627 | True | 349.0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 4.03438 | 4.750103205615642 | 272.0 | True | False | False | True | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00041
dataset_id: DS004
record_json:
{"gene_id":"Ma10_g18130","robust_pathway_count":"1","robust_module_count":"1","modules":"Cell cycle and microtubules","pathways":"GO:0000082 | G1/S transition of mitotic cell cycle","all_three_pathway_count":"1","GO_annotation":"Cellular Component: nucleus (GO:0005634);; ","Swiss_Prot_annotation":"Cyclin-A3-1","NR_annotation":"PREDICTED: cyclin-A3-1-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.44324636263262","recovery_shrunk_log2fc":"0.245130785043374","recovery_padj":"0.782541423786135","reciprocal_log2fc":"-1.11096992483834","reciprocal_shrunk_log2fc":"-1.06641493603731","reciprocal_padj":"2.1642291971705103e-09","exclude_pair_log2fc":"-1.07117978996947","exclude_pair_shrunk_log2fc":"-0.984883629125968","exclude_pair_padj":"0.001015697822115","five_traceable_log2fc":"-1.13926323717887","five_traceable_shrunk_log2fc":"-1.09152053437358","five_traceable_padj":"8.80111664041757e-08","paper_counts_log2fc":"-1.72284084763886","paper_counts_shrunk_log2fc":"-1.60203423629874","paper_counts_padj":"3.96877347655388e-10","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-1.06641493603731","corrected_median_base_mean":"865.591410468509","corrected_direction_stable":"True","protein_length":"373.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma10_g18130 | 1 | 1 | Cell cycle and microtubules | GO:0000082 | G1/S transition of mitotic cell cycle | 1 | Cellular Component: nucleus (GO:0005634);;  | Cyclin-A3-1 | PREDICTED: cyclin-A3-1-like [Musa acuminata subsp. malaccensis] | 0.44324636263262 | 0.245130785043374 | 0.782541423786135 | -1.11096992483834 | -1.06641493603731 | 2.1642291971705103e-09 | -1.07117978996947 | -0.984883629125968 | 0.001015697822115 | -1.13926323717887 | -1.09152053437358 | 8.80111664041757e-08 | -1.72284084763886 | -1.60203423629874 | 3.96877347655388e-10 | True | True | -1.06641493603731 | 865.591410468509 | True | 373.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS004_R00042
dataset_id: DS004
record_json:
{"gene_id":"Ma01_g16000","robust_pathway_count":"1","robust_module_count":"1","modules":"Cell cycle and microtubules","pathways":"GO:0000082 | G1/S transition of mitotic cell cycle","all_three_pathway_count":"1","GO_annotation":"--","Swiss_Prot_annotation":"Cyclin-D1-1","NR_annotation":"PREDICTED: cyclin-D2-1-like [Musa acuminata subsp. malaccensis]","recovery_log2fc":"3.84518232464242","recovery_shrunk_log2fc":"1.21974198580001","recovery_padj":"0.0008855378592914","reciprocal_log2fc":"-2.23078639240308","reciprocal_shrunk_log2fc":"-1.6243252041859","reciprocal_padj":"0.0001426023639683","exclude_pair_log2fc":"-2.33481750946177","exclude_pair_shrunk_log2fc":"-1.91765489251249","exclude_pair_padj":"1.13495145258283e-06","five_traceable_log2fc":"-2.58673046561125","five_traceable_shrunk_log2fc":"-2.13877220735264","five_traceable_padj":"3.42002411700426e-08","paper_counts_log2fc":"-2.66971116941584","paper_counts_shrunk_log2fc":"-2.53341210085137","paper_counts_padj":"2.01914043532077e-32","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True","corrected_median_effect":"-1.91765489251249","corrected_median_base_mean":"461.581137887697","corrected_direction_stable":"True","protein_length":"379.0","replicated_peak_count":"0","both_promoter_peak_count":"0","either_promoter_peak_count":"0","motif_peak_count":"0","summit50_motif_peak_count":"0","both_promoter_motif_peak_count":"0","both_promoter_summit50_motif_peak_count":"0","max_minimum_fold_enrichment":"","max_geometric_mean_fold_enrichment":"","max_overlap_bp":"","replicated_target":"False","both_promoter_target":"False","either_promoter_target":"False","replicated_motif_target":"False","both_promoter_motif_target":"False","both_promoter_summit50_motif_target":"False","table_s4_dhs_count":"1","same_gene_maeil9_dap_dhs_overlap":"False","bridge_priority":"accessible axis gene without a reconstructed promoter peak"}

search_text:
Ma01_g16000 | 1 | 1 | Cell cycle and microtubules | GO:0000082 | G1/S transition of mitotic cell cycle | 1 | -- | Cyclin-D1-1 | PREDICTED: cyclin-D2-1-like [Musa acuminata subsp. malaccensis] | 3.84518232464242 | 1.21974198580001 | 0.0008855378592914 | -2.23078639240308 | -1.6243252041859 | 0.0001426023639683 | -2.33481750946177 | -1.91765489251249 | 1.13495145258283e-06 | -2.58673046561125 | -2.13877220735264 | 3.42002411700426e-08 | -2.66971116941584 | -2.53341210085137 | 2.01914043532077e-32 | True | True | -1.91765489251249 | 461.581137887697 | True | 379.0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | False | False | False | False | False | False | 1 | False | accessible axis gene without a reconstructed promoter peak


record_id: DS005_R00001
dataset_id: DS005
record_json:
{"indicator":"both_promoter_target","indicator_label":"Promoter peak","module":"All robust axis","universe_genes":"7403","tested_set_genes":"42","indicator_genes":"1085","observed_overlap":"12","observed_proportion":"0.2857142857142857","background_proportion":"0.14656220451168445","fold_enrichment":"1.9494404213298222","fisher_odds_ratio":"2.3440820130475304","fisher_upper_p":"0.01471273357882158","fisher_two_sided_p":"0.025123448745130735","fisher_upper_q_global":"0.08413106546036948","fisher_upper_q_within_indicator":"0.03678183394705395"}

search_text:
both_promoter_target | Promoter peak | All robust axis | 7403 | 42 | 1085 | 12 | 0.2857142857142857 | 0.14656220451168445 | 1.9494404213298222 | 2.3440820130475304 | 0.01471273357882158 | 0.025123448745130735 | 0.08413106546036948 | 0.03678183394705395


record_id: DS005_R00002
dataset_id: DS005
record_json:
{"indicator":"both_promoter_target","indicator_label":"Promoter peak","module":"High recurrence core","universe_genes":"7403","tested_set_genes":"5","indicator_genes":"1085","observed_overlap":"1","observed_proportion":"0.2","background_proportion":"0.14656220451168445","fold_enrichment":"1.3646082949308758","fisher_odds_ratio":"1.456180811808118","fisher_upper_p":"0.5473541209543685","fisher_two_sided_p":"0.5473541209543685","fisher_upper_q_global":"0.6841926511929606","fisher_upper_q_within_indicator":"0.5473541209543685"}

search_text:
both_promoter_target | Promoter peak | High recurrence core | 7403 | 5 | 1085 | 1 | 0.2 | 0.14656220451168445 | 1.3646082949308758 | 1.456180811808118 | 0.5473541209543685 | 0.5473541209543685 | 0.6841926511929606 | 0.5473541209543685


record_id: DS005_R00003
dataset_id: DS005
record_json:
{"indicator":"both_promoter_target","indicator_label":"Promoter peak","module":"Cell cycle and microtubules","universe_genes":"7403","tested_set_genes":"10","indicator_genes":"1085","observed_overlap":"3","observed_proportion":"0.3","background_proportion":"0.14656220451168445","fold_enrichment":"2.046912442396313","fisher_odds_ratio":"2.4997359387377873","fisher_upper_p":"0.170838763188197","fisher_two_sided_p":"0.170838763188197","fisher_upper_q_global":"0.37964169597377107","fisher_upper_q_within_indicator":"0.2847312719803283"}

search_text:
both_promoter_target | Promoter peak | Cell cycle and microtubules | 7403 | 10 | 1085 | 3 | 0.3 | 0.14656220451168445 | 2.046912442396313 | 2.4997359387377873 | 0.170838763188197 | 0.170838763188197 | 0.37964169597377107 | 0.2847312719803283


record_id: DS005_R00004
dataset_id: DS005
record_json:
{"indicator":"both_promoter_target","indicator_label":"Promoter peak","module":"RNA and ribosome biogenesis","universe_genes":"7403","tested_set_genes":"22","indicator_genes":"1085","observed_overlap":"4","observed_proportion":"0.18181818181818182","background_proportion":"0.14656220451168445","fold_enrichment":"1.2405529953917052","fisher_odds_ratio":"1.2950971322849214","fisher_upper_p":"0.40660422725193873","fisher_two_sided_p":"0.5524344325515064","fisher_upper_q_global":"0.5421389696692517","fisher_upper_q_within_indicator":"0.5082552840649234"}

search_text:
both_promoter_target | Promoter peak | RNA and ribosome biogenesis | 7403 | 22 | 1085 | 4 | 0.18181818181818182 | 0.14656220451168445 | 1.2405529953917052 | 1.2950971322849214 | 0.40660422725193873 | 0.5524344325515064 | 0.5421389696692517 | 0.5082552840649234


record_id: DS005_R00005
dataset_id: DS005
record_json:
{"indicator":"both_promoter_target","indicator_label":"Promoter peak","module":"Lipid-ethylene metabolism","universe_genes":"7403","tested_set_genes":"10","indicator_genes":"1085","observed_overlap":"5","observed_proportion":"0.5","background_proportion":"0.14656220451168445","fold_enrichment":"3.411520737327189","fisher_odds_ratio":"5.845370370370371","fisher_upper_p":"0.00888775337580891","fisher_two_sided_p":"0.00888775337580891","fisher_upper_q_global":"0.08413106546036948","fisher_upper_q_within_indicator":"0.03678183394705395"}

search_text:
both_promoter_target | Promoter peak | Lipid-ethylene metabolism | 7403 | 10 | 1085 | 5 | 0.5 | 0.14656220451168445 | 3.411520737327189 | 5.845370370370371 | 0.00888775337580891 | 0.00888775337580891 | 0.08413106546036948 | 0.03678183394705395


record_id: DS005_R00006
dataset_id: DS005
record_json:
{"indicator":"both_promoter_motif_target","indicator_label":"Promoter + motif","module":"All robust axis","universe_genes":"7403","tested_set_genes":"42","indicator_genes":"830","observed_overlap":"9","observed_proportion":"0.21428571428571427","background_proportion":"0.11211670944211806","fold_enrichment":"1.911273666092943","fisher_odds_ratio":"2.1725168862805893","fisher_upper_p":"0.03996854429834649","fisher_two_sided_p":"0.046644961761526715","fisher_upper_q_global":"0.15987417719338595","fisher_upper_q_within_indicator":"0.19984272149173243"}

search_text:
both_promoter_motif_target | Promoter + motif | All robust axis | 7403 | 42 | 830 | 9 | 0.21428571428571427 | 0.11211670944211806 | 1.911273666092943 | 2.1725168862805893 | 0.03996854429834649 | 0.046644961761526715 | 0.15987417719338595 | 0.19984272149173243


record_id: DS005_R00007
dataset_id: DS005
record_json:
{"indicator":"both_promoter_motif_target","indicator_label":"Promoter + motif","module":"High recurrence core","universe_genes":"7403","tested_set_genes":"5","indicator_genes":"830","observed_overlap":"0","observed_proportion":"0.0","background_proportion":"0.11211670944211806","fold_enrichment":"0.0","fisher_odds_ratio":"0.0","fisher_upper_p":"1.0","fisher_two_sided_p":"1.0","fisher_upper_q_global":"1.0","fisher_upper_q_within_indicator":"1.0"}

search_text:
both_promoter_motif_target | Promoter + motif | High recurrence core | 7403 | 5 | 830 | 0 | 0.0 | 0.11211670944211806 | 0.0 | 0.0 | 1.0 | 1.0 | 1.0 | 1.0


record_id: DS005_R00008
dataset_id: DS005
record_json:
{"indicator":"both_promoter_motif_target","indicator_label":"Promoter + motif","module":"Cell cycle and microtubules","universe_genes":"7403","tested_set_genes":"10","indicator_genes":"830","observed_overlap":"2","observed_proportion":"0.2","background_proportion":"0.11211670944211806","fold_enrichment":"1.783855421686747","fisher_odds_ratio":"1.9821859903381642","fisher_upper_p":"0.3110427139197585","fisher_two_sided_p":"0.3110427139197585","fisher_upper_q_global":"0.47852725218424386","fisher_upper_q_within_indicator":"0.38880339239969813"}

search_text:
both_promoter_motif_target | Promoter + motif | Cell cycle and microtubules | 7403 | 10 | 830 | 2 | 0.2 | 0.11211670944211806 | 1.783855421686747 | 1.9821859903381642 | 0.3110427139197585 | 0.3110427139197585 | 0.47852725218424386 | 0.38880339239969813


record_id: DS005_R00009
dataset_id: DS005
record_json:
{"indicator":"both_promoter_motif_target","indicator_label":"Promoter + motif","module":"RNA and ribosome biogenesis","universe_genes":"7403","tested_set_genes":"22","indicator_genes":"830","observed_overlap":"4","observed_proportion":"0.18181818181818182","background_proportion":"0.11211670944211806","fold_enrichment":"1.621686746987952","fisher_odds_ratio":"1.7635189669087974","fisher_upper_p":"0.22785519043106744","fisher_two_sided_p":"0.30065239195443083","fisher_upper_q_global":"0.4116802114907676","fisher_upper_q_within_indicator":"0.3797586507184458"}

search_text:
both_promoter_motif_target | Promoter + motif | RNA and ribosome biogenesis | 7403 | 22 | 830 | 4 | 0.18181818181818182 | 0.11211670944211806 | 1.621686746987952 | 1.7635189669087974 | 0.22785519043106744 | 0.30065239195443083 | 0.4116802114907676 | 0.3797586507184458


record_id: DS005_R00010
dataset_id: DS005
record_json:
{"indicator":"both_promoter_motif_target","indicator_label":"Promoter + motif","module":"Lipid-ethylene metabolism","universe_genes":"7403","tested_set_genes":"10","indicator_genes":"830","observed_overlap":"3","observed_proportion":"0.3","background_proportion":"0.11211670944211806","fold_enrichment":"2.6757831325301202","fisher_odds_ratio":"3.4026602176541716","fisher_upper_p":"0.09243423269229421","fisher_two_sided_p":"0.09243423269229421","fisher_upper_q_global":"0.2890857669237183","fisher_upper_q_within_indicator":"0.2310855817307355"}

search_text:
both_promoter_motif_target | Promoter + motif | Lipid-ethylene metabolism | 7403 | 10 | 830 | 3 | 0.3 | 0.11211670944211806 | 2.6757831325301202 | 3.4026602176541716 | 0.09243423269229421 | 0.09243423269229421 | 0.2890857669237183 | 0.2310855817307355


record_id: DS005_R00011
dataset_id: DS005
record_json:
{"indicator":"both_promoter_summit50_motif_target","indicator_label":"Promoter + summit motif","module":"All robust axis","universe_genes":"7403","tested_set_genes":"42","indicator_genes":"708","observed_overlap":"7","observed_proportion":"0.16666666666666666","background_proportion":"0.09563690395785493","fold_enrichment":"1.7427024482109226","fisher_odds_ratio":"1.9001426533523538","fisher_upper_p":"0.1011800184233014","fisher_two_sided_p":"0.11566894933404101","fisher_upper_q_global":"0.2890857669237183","fisher_upper_q_within_indicator":"0.4116802114907676"}

search_text:
both_promoter_summit50_motif_target | Promoter + summit motif | All robust axis | 7403 | 42 | 708 | 7 | 0.16666666666666666 | 0.09563690395785493 | 1.7427024482109226 | 1.9001426533523538 | 0.1011800184233014 | 0.11566894933404101 | 0.2890857669237183 | 0.4116802114907676


record_id: DS005_R00012
dataset_id: DS005
record_json:
{"indicator":"both_promoter_summit50_motif_target","indicator_label":"Promoter + summit motif","module":"High recurrence core","universe_genes":"7403","tested_set_genes":"5","indicator_genes":"708","observed_overlap":"0","observed_proportion":"0.0","background_proportion":"0.09563690395785493","fold_enrichment":"0.0","fisher_odds_ratio":"0.0","fisher_upper_p":"1.0","fisher_two_sided_p":"1.0","fisher_upper_q_global":"1.0","fisher_upper_q_within_indicator":"1.0"}

search_text:
both_promoter_summit50_motif_target | Promoter + summit motif | High recurrence core | 7403 | 5 | 708 | 0 | 0.0 | 0.09563690395785493 | 0.0 | 0.0 | 1.0 | 1.0 | 1.0 | 1.0


record_id: DS005_R00013
dataset_id: DS005
record_json:
{"indicator":"both_promoter_summit50_motif_target","indicator_label":"Promoter + summit motif","module":"Cell cycle and microtubules","universe_genes":"7403","tested_set_genes":"10","indicator_genes":"708","observed_overlap":"2","observed_proportion":"0.2","background_proportion":"0.09563690395785493","fold_enrichment":"2.0912429378531074","fisher_odds_ratio":"2.367917847025496","fisher_upper_p":"0.24700812689446056","fisher_two_sided_p":"0.24700812689446056","fisher_upper_q_global":"0.4116802114907676","fisher_upper_q_within_indicator":"0.4116802114907676"}

search_text:
both_promoter_summit50_motif_target | Promoter + summit motif | Cell cycle and microtubules | 7403 | 10 | 708 | 2 | 0.2 | 0.09563690395785493 | 2.0912429378531074 | 2.367917847025496 | 0.24700812689446056 | 0.24700812689446056 | 0.4116802114907676 | 0.4116802114907676


record_id: DS005_R00014
dataset_id: DS005
record_json:
{"indicator":"both_promoter_summit50_motif_target","indicator_label":"Promoter + summit motif","module":"RNA and ribosome biogenesis","universe_genes":"7403","tested_set_genes":"22","indicator_genes":"708","observed_overlap":"3","observed_proportion":"0.13636363636363635","background_proportion":"0.09563690395785493","fold_enrichment":"1.4258474576271185","fisher_odds_ratio":"1.49518477043673","fisher_upper_p":"0.3526862851501976","fisher_two_sided_p":"0.4618570348138268","fisher_upper_q_global":"0.5038375502145681","fisher_upper_q_within_indicator":"0.440857856437747"}

search_text:
both_promoter_summit50_motif_target | Promoter + summit motif | RNA and ribosome biogenesis | 7403 | 22 | 708 | 3 | 0.13636363636363635 | 0.09563690395785493 | 1.4258474576271185 | 1.49518477043673 | 0.3526862851501976 | 0.4618570348138268 | 0.5038375502145681 | 0.440857856437747


record_id: DS005_R00015
dataset_id: DS005
record_json:
{"indicator":"both_promoter_summit50_motif_target","indicator_label":"Promoter + summit motif","module":"Lipid-ethylene metabolism","universe_genes":"7403","tested_set_genes":"10","indicator_genes":"708","observed_overlap":"2","observed_proportion":"0.2","background_proportion":"0.09563690395785493","fold_enrichment":"2.0912429378531074","fisher_odds_ratio":"2.367917847025496","fisher_upper_p":"0.24700812689446056","fisher_two_sided_p":"0.24700812689446056","fisher_upper_q_global":"0.4116802114907676","fisher_upper_q_within_indicator":"0.4116802114907676"}

search_text:
both_promoter_summit50_motif_target | Promoter + summit motif | Lipid-ethylene metabolism | 7403 | 10 | 708 | 2 | 0.2 | 0.09563690395785493 | 2.0912429378531074 | 2.367917847025496 | 0.24700812689446056 | 0.24700812689446056 | 0.4116802114907676 | 0.4116802114907676


record_id: DS005_R00016
dataset_id: DS005
record_json:
{"indicator":"same_gene_dap_dhs_overlap","indicator_label":"Promoter peak-DHS overlap","module":"All robust axis","universe_genes":"7403","tested_set_genes":"42","indicator_genes":"478","observed_overlap":"7","observed_proportion":"0.16666666666666666","background_proportion":"0.06456841820883426","fold_enrichment":"2.581241283124128","fisher_odds_ratio":"2.9256900212314223","fisher_upper_p":"0.016826213092073897","fisher_two_sided_p":"0.016826213092073897","fisher_upper_q_global":"0.08413106546036948","fisher_upper_q_within_indicator":"0.04206553273018474"}

search_text:
same_gene_dap_dhs_overlap | Promoter peak-DHS overlap | All robust axis | 7403 | 42 | 478 | 7 | 0.16666666666666666 | 0.06456841820883426 | 2.581241283124128 | 2.9256900212314223 | 0.016826213092073897 | 0.016826213092073897 | 0.08413106546036948 | 0.04206553273018474


record_id: DS005_R00017
dataset_id: DS005
record_json:
{"indicator":"same_gene_dap_dhs_overlap","indicator_label":"Promoter peak-DHS overlap","module":"High recurrence core","universe_genes":"7403","tested_set_genes":"5","indicator_genes":"478","observed_overlap":"0","observed_proportion":"0.0","background_proportion":"0.06456841820883426","fold_enrichment":"0.0","fisher_odds_ratio":"0.0","fisher_upper_p":"1.0","fisher_two_sided_p":"1.0","fisher_upper_q_global":"1.0","fisher_upper_q_within_indicator":"1.0"}

search_text:
same_gene_dap_dhs_overlap | Promoter peak-DHS overlap | High recurrence core | 7403 | 5 | 478 | 0 | 0.0 | 0.06456841820883426 | 0.0 | 0.0 | 1.0 | 1.0 | 1.0 | 1.0


record_id: DS005_R00018
dataset_id: DS005
record_json:
{"indicator":"same_gene_dap_dhs_overlap","indicator_label":"Promoter peak-DHS overlap","module":"Cell cycle and microtubules","universe_genes":"7403","tested_set_genes":"10","indicator_genes":"478","observed_overlap":"0","observed_proportion":"0.0","background_proportion":"0.06456841820883426","fold_enrichment":"0.0","fisher_odds_ratio":"0.0","fisher_upper_p":"1.0","fisher_two_sided_p":"1.0","fisher_upper_q_global":"1.0","fisher_upper_q_within_indicator":"1.0"}

search_text:
same_gene_dap_dhs_overlap | Promoter peak-DHS overlap | Cell cycle and microtubules | 7403 | 10 | 478 | 0 | 0.0 | 0.06456841820883426 | 0.0 | 0.0 | 1.0 | 1.0 | 1.0 | 1.0


record_id: DS005_R00019
dataset_id: DS005
record_json:
{"indicator":"same_gene_dap_dhs_overlap","indicator_label":"Promoter peak-DHS overlap","module":"RNA and ribosome biogenesis","universe_genes":"7403","tested_set_genes":"22","indicator_genes":"478","observed_overlap":"3","observed_proportion":"0.13636363636363635","background_proportion":"0.06456841820883426","fold_enrichment":"2.1119246861924683","fisher_odds_ratio":"2.295623268698061","fisher_upper_p":"0.16632896460343177","fisher_two_sided_p":"0.16632896460343177","fisher_upper_q_global":"0.37964169597377107","fisher_upper_q_within_indicator":"0.27721494100571964"}

search_text:
same_gene_dap_dhs_overlap | Promoter peak-DHS overlap | RNA and ribosome biogenesis | 7403 | 22 | 478 | 3 | 0.13636363636363635 | 0.06456841820883426 | 2.1119246861924683 | 2.295623268698061 | 0.16632896460343177 | 0.16632896460343177 | 0.37964169597377107 | 0.27721494100571964


record_id: DS005_R00020
dataset_id: DS005
record_json:
{"indicator":"same_gene_dap_dhs_overlap","indicator_label":"Promoter peak-DHS overlap","module":"Lipid-ethylene metabolism","universe_genes":"7403","tested_set_genes":"10","indicator_genes":"478","observed_overlap":"4","observed_proportion":"0.4","background_proportion":"0.06456841820883426","fold_enrichment":"6.194979079497908","fisher_odds_ratio":"9.731364275668072","fisher_upper_p":"0.0026354991169750277","fisher_two_sided_p":"0.0026354991169750277","fisher_upper_q_global":"0.05270998233950055","fisher_upper_q_within_indicator":"0.013177495584875137"}

search_text:
same_gene_dap_dhs_overlap | Promoter peak-DHS overlap | Lipid-ethylene metabolism | 7403 | 10 | 478 | 4 | 0.4 | 0.06456841820883426 | 6.194979079497908 | 9.731364275668072 | 0.0026354991169750277 | 0.0026354991169750277 | 0.05270998233950055 | 0.013177495584875137


record_id: DS006_R00001
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEIL2","v1_protein_id":"GSMUA_Achr9P27680_001","v1_record_found":"True","mapping_confidence":"exact_protein_sequence","mapping_boundary":"Sequence identity; gene models may have multiple isoforms","v1_protein_length":"610.0","v2_protein_id":"Ma09_p28310.1","v2_gene_id":"Ma09_g28310","exact_sequence_match":"True","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"","seed_hits":"","matching_residues":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity_min_coverage":"","runner_up_sw_identity_min_coverage":"","runner_up_symmetric_exact_coverage":"","in_robust_axis":"False","axis_module":"","axis_swiss_prot_annotation":"","corrected_median_base_mean_mapping":"1648.39161557812","corrected_median_effect_mapping":"1.2327320610123","corrected_direction_stable":"True","five_traceable_base_mean":"1703.35873555035","five_traceable_shrunk_effect":"1.2327320610123","five_traceable_padj":"6.24343780495895e-10","gene_id":"Ma09_g28310","corrected_median_effect":"1.2327320610123","corrected_median_base_mean":"1648.39161557812","protein_length":"610.0","base_bin":"4","length_bin":"4","family":"EIL"}

search_text:
MaEIL2 | GSMUA_Achr9P27680_001 | True | exact_protein_sequence | Sequence identity; gene models may have multiple isoforms | 610.0 | Ma09_p28310.1 | Ma09_g28310 | True | 1.0 | 1.0 | 1.0 | False | 1648.39161557812 | 1.2327320610123 | True | 1703.35873555035 | 1.2327320610123 | 6.24343780495895e-10 | Ma09_g28310 | 1.2327320610123 | 1648.39161557812 | 610.0 | 4 | 4 | EIL


record_id: DS006_R00002
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEIL3","v1_protein_id":"GSMUA_Achr10P12800_001","v1_record_found":"True","mapping_confidence":"high_confidence_alignment","mapping_boundary":"Best local protein alignment; inspect runner-up margin","v1_protein_length":"522.0","v2_protein_id":"Ma10_p12970.1","v2_gene_id":"Ma10_g12970","exact_sequence_match":"False","alternative_exact_v2_proteins":"","sw_identity":"0.9980842911877394","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"Ma10_p12970.1","seed_hits":"44.0","matching_residues":"522.0","query_exact_coverage":"1.0","target_exact_coverage":"0.8194662480376766","symmetric_exact_coverage":"0.900776531492666","sw_score":"2676.0","sw_identity_min_coverage":"0.9980842911877394","runner_up_sw_identity_min_coverage":"0.8920039064884331","runner_up_symmetric_exact_coverage":"0.7968885047536733","in_robust_axis":"True","axis_module":"Lipid-ethylene metabolism","axis_swiss_prot_annotation":"Protein ETHYLENE INSENSITIVE 3","corrected_median_base_mean_mapping":"5357.53478327486","corrected_median_effect_mapping":"1.1563440307849","corrected_direction_stable":"True","five_traceable_base_mean":"5451.17857655712","five_traceable_shrunk_effect":"1.24585621269144","five_traceable_padj":"7.93969015403449e-07","gene_id":"Ma10_g12970","corrected_median_effect":"1.1563440307849","corrected_median_base_mean":"5357.53478327486","protein_length":"637.0","base_bin":"4","length_bin":"4","family":"EIL"}

search_text:
MaEIL3 | GSMUA_Achr10P12800_001 | True | high_confidence_alignment | Best local protein alignment; inspect runner-up margin | 522.0 | Ma10_p12970.1 | Ma10_g12970 | False | 0.9980842911877394 | 1.0 | 1.0 | Ma10_p12970.1 | 44.0 | 522.0 | 1.0 | 0.8194662480376766 | 0.900776531492666 | 2676.0 | 0.9980842911877394 | 0.8920039064884331 | 0.7968885047536733 | True | Lipid-ethylene metabolism | Protein ETHYLENE INSENSITIVE 3 | 5357.53478327486 | 1.1563440307849 | True | 5451.17857655712 | 1.24585621269144 | 7.93969015403449e-07 | Ma10_g12970 | 1.1563440307849 | 5357.53478327486 | 637.0 | 4 | 4 | EIL


record_id: DS006_R00003
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEIL4","v1_protein_id":"GSMUA_Achr6P15930_001","v1_record_found":"True","mapping_confidence":"high_confidence_alignment","mapping_boundary":"Best local protein alignment; inspect runner-up margin","v1_protein_length":"518.0","v2_protein_id":"Ma06_p17470.1","v2_gene_id":"Ma06_g17470","exact_sequence_match":"False","alternative_exact_v2_proteins":"","sw_identity":"0.998069498069498","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"Ma06_p17470.1","seed_hits":"44.0","matching_residues":"518.0","query_exact_coverage":"1.0","target_exact_coverage":"0.815748031496063","symmetric_exact_coverage":"0.8985255854293148","sw_score":"2643.0","sw_identity_min_coverage":"0.998069498069498","runner_up_sw_identity_min_coverage":"0.8891184417500207","runner_up_symmetric_exact_coverage":"0.7948051948051948","in_robust_axis":"True","axis_module":"Lipid-ethylene metabolism","axis_swiss_prot_annotation":"Protein ETHYLENE INSENSITIVE 3","corrected_median_base_mean_mapping":"2119.74768092779","corrected_median_effect_mapping":"0.98693003989986","corrected_direction_stable":"True","five_traceable_base_mean":"2142.99833500599","five_traceable_shrunk_effect":"1.02411845577379","five_traceable_padj":"0.0001613580192923","gene_id":"Ma06_g17470","corrected_median_effect":"0.98693003989986","corrected_median_base_mean":"2119.74768092779","protein_length":"635.0","base_bin":"4","length_bin":"4","family":"EIL"}

search_text:
MaEIL4 | GSMUA_Achr6P15930_001 | True | high_confidence_alignment | Best local protein alignment; inspect runner-up margin | 518.0 | Ma06_p17470.1 | Ma06_g17470 | False | 0.998069498069498 | 1.0 | 1.0 | Ma06_p17470.1 | 44.0 | 518.0 | 1.0 | 0.815748031496063 | 0.8985255854293148 | 2643.0 | 0.998069498069498 | 0.8891184417500207 | 0.7948051948051948 | True | Lipid-ethylene metabolism | Protein ETHYLENE INSENSITIVE 3 | 2119.74768092779 | 0.98693003989986 | True | 2142.99833500599 | 1.02411845577379 | 0.0001613580192923 | Ma06_g17470 | 0.98693003989986 | 2119.74768092779 | 635.0 | 4 | 4 | EIL


record_id: DS006_R00004
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEIL5","v1_protein_id":"GSMUA_Achr9P17080_001","v1_record_found":"True","mapping_confidence":"exact_protein_sequence","mapping_boundary":"Sequence identity; gene models may have multiple isoforms","v1_protein_length":"622.0","v2_protein_id":"Ma09_p16910.1","v2_gene_id":"Ma09_g16910","exact_sequence_match":"True","alternative_exact_v2_proteins":"Ma09_p16910.2","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"","seed_hits":"","matching_residues":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity_min_coverage":"","runner_up_sw_identity_min_coverage":"","runner_up_symmetric_exact_coverage":"","in_robust_axis":"False","axis_module":"","axis_swiss_prot_annotation":"","corrected_median_base_mean_mapping":"163.062891837999","corrected_median_effect_mapping":"0.676951845020113","corrected_direction_stable":"True","five_traceable_base_mean":"163.062891837999","five_traceable_shrunk_effect":"0.676951845020113","five_traceable_padj":"0.0196105947930713","gene_id":"Ma09_g16910","corrected_median_effect":"0.676951845020113","corrected_median_base_mean":"163.062891837999","protein_length":"622.0","base_bin":"1","length_bin":"4","family":"EIL"}

search_text:
MaEIL5 | GSMUA_Achr9P17080_001 | True | exact_protein_sequence | Sequence identity; gene models may have multiple isoforms | 622.0 | Ma09_p16910.1 | Ma09_g16910 | True | Ma09_p16910.2 | 1.0 | 1.0 | 1.0 | False | 163.062891837999 | 0.676951845020113 | True | 163.062891837999 | 0.676951845020113 | 0.0196105947930713 | Ma09_g16910 | 0.676951845020113 | 163.062891837999 | 622.0 | 1 | 4 | EIL


record_id: DS006_R00005
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEIL6","v1_protein_id":"GSMUA_Achr2P11540_001","v1_record_found":"True","mapping_confidence":"exact_protein_sequence","mapping_boundary":"Sequence identity; gene models may have multiple isoforms","v1_protein_length":"604.0","v2_protein_id":"Ma02_p13450.1","v2_gene_id":"Ma02_g13450","exact_sequence_match":"True","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"","seed_hits":"","matching_residues":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity_min_coverage":"","runner_up_sw_identity_min_coverage":"","runner_up_symmetric_exact_coverage":"","in_robust_axis":"False","axis_module":"","axis_swiss_prot_annotation":"","corrected_median_base_mean_mapping":"3920.06525128563","corrected_median_effect_mapping":"0.628544529784469","corrected_direction_stable":"True","five_traceable_base_mean":"3920.06525128563","five_traceable_shrunk_effect":"0.663264643785472","five_traceable_padj":"5.34478501133185e-05","gene_id":"Ma02_g13450","corrected_median_effect":"0.628544529784469","corrected_median_base_mean":"3920.06525128563","protein_length":"604.0","base_bin":"4","length_bin":"4","family":"EIL"}

search_text:
MaEIL6 | GSMUA_Achr2P11540_001 | True | exact_protein_sequence | Sequence identity; gene models may have multiple isoforms | 604.0 | Ma02_p13450.1 | Ma02_g13450 | True | 1.0 | 1.0 | 1.0 | False | 3920.06525128563 | 0.628544529784469 | True | 3920.06525128563 | 0.663264643785472 | 5.34478501133185e-05 | Ma02_g13450 | 0.628544529784469 | 3920.06525128563 | 604.0 | 4 | 4 | EIL


record_id: DS006_R00006
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEIL7","v1_protein_id":"GSMUA_Achr5P27670_001","v1_record_found":"True","mapping_confidence":"exact_protein_sequence","mapping_boundary":"Sequence identity; gene models may have multiple isoforms","v1_protein_length":"627.0","v2_protein_id":"Ma05_p30040.1","v2_gene_id":"Ma05_g30040","exact_sequence_match":"True","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"","seed_hits":"","matching_residues":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity_min_coverage":"","runner_up_sw_identity_min_coverage":"","runner_up_symmetric_exact_coverage":"","in_robust_axis":"False","axis_module":"","axis_swiss_prot_annotation":"","corrected_median_base_mean_mapping":"2890.55703221003","corrected_median_effect_mapping":"0.274296725181198","corrected_direction_stable":"True","five_traceable_base_mean":"2801.91754911024","five_traceable_shrunk_effect":"0.277412093231674","five_traceable_padj":"0.219835270325103","gene_id":"Ma05_g30040","corrected_median_effect":"0.274296725181198","corrected_median_base_mean":"2890.55703221003","protein_length":"627.0","base_bin":"4","length_bin":"4","family":"EIL"}

search_text:
MaEIL7 | GSMUA_Achr5P27670_001 | True | exact_protein_sequence | Sequence identity; gene models may have multiple isoforms | 627.0 | Ma05_p30040.1 | Ma05_g30040 | True | 1.0 | 1.0 | 1.0 | False | 2890.55703221003 | 0.274296725181198 | True | 2801.91754911024 | 0.277412093231674 | 0.219835270325103 | Ma05_g30040 | 0.274296725181198 | 2890.55703221003 | 627.0 | 4 | 4 | EIL


record_id: DS006_R00007
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEIL8","v1_protein_id":"GSMUA_Achr11P25120_001","v1_record_found":"True","mapping_confidence":"exact_protein_sequence","mapping_boundary":"Sequence identity; gene models may have multiple isoforms","v1_protein_length":"592.0","v2_protein_id":"Ma11_p23440.1","v2_gene_id":"Ma11_g23440","exact_sequence_match":"True","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"","seed_hits":"","matching_residues":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity_min_coverage":"","runner_up_sw_identity_min_coverage":"","runner_up_symmetric_exact_coverage":"","in_robust_axis":"False","axis_module":"","axis_swiss_prot_annotation":"","corrected_median_base_mean_mapping":"48.9281683795265","corrected_median_effect_mapping":"-0.874823239208842","corrected_direction_stable":"True","five_traceable_base_mean":"48.9281683795265","five_traceable_shrunk_effect":"-1.10863844547084","five_traceable_padj":"0.0433750445281137","gene_id":"Ma11_g23440","corrected_median_effect":"-0.874823239208842","corrected_median_base_mean":"48.9281683795265","protein_length":"592.0","base_bin":"1","length_bin":"3","family":"EIL"}

search_text:
MaEIL8 | GSMUA_Achr11P25120_001 | True | exact_protein_sequence | Sequence identity; gene models may have multiple isoforms | 592.0 | Ma11_p23440.1 | Ma11_g23440 | True | 1.0 | 1.0 | 1.0 | False | 48.9281683795265 | -0.874823239208842 | True | 48.9281683795265 | -1.10863844547084 | 0.0433750445281137 | Ma11_g23440 | -0.874823239208842 | 48.9281683795265 | 592.0 | 1 | 3 | EIL


record_id: DS006_R00008
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEIL9","v1_protein_id":"GSMUA_Achr8P21550_001","v1_record_found":"True","mapping_confidence":"exact_protein_sequence","mapping_boundary":"Sequence identity; gene models may have multiple isoforms","v1_protein_length":"634.0","v2_protein_id":"Ma08_p22320.1","v2_gene_id":"Ma08_g22320","exact_sequence_match":"True","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"","seed_hits":"","matching_residues":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity_min_coverage":"","runner_up_sw_identity_min_coverage":"","runner_up_symmetric_exact_coverage":"","in_robust_axis":"True","axis_module":"Lipid-ethylene metabolism","axis_swiss_prot_annotation":"ETHYLENE INSENSITIVE 3-like 1 protein","corrected_median_base_mean_mapping":"1044.2177474269","corrected_median_effect_mapping":"0.587047601395107","corrected_direction_stable":"True","five_traceable_base_mean":"1055.50551685855","five_traceable_shrunk_effect":"0.591889719092093","five_traceable_padj":"0.0036844017548802","gene_id":"Ma08_g22320","corrected_median_effect":"0.587047601395107","corrected_median_base_mean":"1044.2177474269","protein_length":"634.0","base_bin":"3","length_bin":"4","family":"EIL"}

search_text:
MaEIL9 | GSMUA_Achr8P21550_001 | True | exact_protein_sequence | Sequence identity; gene models may have multiple isoforms | 634.0 | Ma08_p22320.1 | Ma08_g22320 | True | 1.0 | 1.0 | 1.0 | True | Lipid-ethylene metabolism | ETHYLENE INSENSITIVE 3-like 1 protein | 1044.2177474269 | 0.587047601395107 | True | 1055.50551685855 | 0.591889719092093 | 0.0036844017548802 | Ma08_g22320 | 0.587047601395107 | 1044.2177474269 | 634.0 | 3 | 4 | EIL


record_id: DS006_R00009
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEIL10","v1_protein_id":"GSMUA_Achr3P09440_001","v1_record_found":"True","mapping_confidence":"high_confidence_alignment","mapping_boundary":"Best local protein alignment; inspect runner-up margin","v1_protein_length":"529.0","v2_protein_id":"Ma03_p09300.1","v2_gene_id":"Ma03_g09300","exact_sequence_match":"False","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"Ma03_p09300.1","seed_hits":"46.0","matching_residues":"529.0","query_exact_coverage":"1.0","target_exact_coverage":"0.9184027777777778","symmetric_exact_coverage":"0.9574660633484164","sw_score":"2804.0","sw_identity_min_coverage":"1.0","runner_up_sw_identity_min_coverage":"0.7431372549019608","runner_up_symmetric_exact_coverage":"0.6707211120764552","in_robust_axis":"False","axis_module":"","axis_swiss_prot_annotation":"","corrected_median_base_mean_mapping":"63.2179242764757","corrected_median_effect_mapping":"-0.523632115299556","corrected_direction_stable":"True","five_traceable_base_mean":"63.2179242764757","five_traceable_shrunk_effect":"-0.668226912910526","five_traceable_padj":"0.159666240697478","gene_id":"Ma03_g09300","corrected_median_effect":"-0.523632115299556","corrected_median_base_mean":"63.2179242764757","protein_length":"576.0","base_bin":"1","length_bin":"3","family":"EIL"}

search_text:
MaEIL10 | GSMUA_Achr3P09440_001 | True | high_confidence_alignment | Best local protein alignment; inspect runner-up margin | 529.0 | Ma03_p09300.1 | Ma03_g09300 | False | 1.0 | 1.0 | 1.0 | Ma03_p09300.1 | 46.0 | 529.0 | 1.0 | 0.9184027777777778 | 0.9574660633484164 | 2804.0 | 1.0 | 0.7431372549019608 | 0.6707211120764552 | False | 63.2179242764757 | -0.523632115299556 | True | 63.2179242764757 | -0.668226912910526 | 0.159666240697478 | Ma03_g09300 | -0.523632115299556 | 63.2179242764757 | 576.0 | 1 | 3 | EIL


record_id: DS006_R00010
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEIL11","v1_protein_id":"GSMUA_Achr3P11160_001","v1_record_found":"True","mapping_confidence":"high_confidence_alignment","mapping_boundary":"Best local protein alignment; inspect runner-up margin","v1_protein_length":"571.0","v2_protein_id":"Ma03_p10900.1","v2_gene_id":"Ma03_g10900","exact_sequence_match":"False","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"0.9254457050243112","target_id":"Ma03_p10900.1","seed_hits":"48.0","matching_residues":"571.0","query_exact_coverage":"1.0","target_exact_coverage":"0.9254457050243112","symmetric_exact_coverage":"0.9612794612794612","sw_score":"3018.0","sw_identity_min_coverage":"0.9254457050243112","runner_up_sw_identity_min_coverage":"0.9254457050243112","runner_up_symmetric_exact_coverage":"0.9612794612794612","in_robust_axis":"False","axis_module":"","axis_swiss_prot_annotation":"","corrected_median_base_mean_mapping":"766.742686694126","corrected_median_effect_mapping":"0.35676879231292","corrected_direction_stable":"True","five_traceable_base_mean":"766.742686694126","five_traceable_shrunk_effect":"0.349828437615216","five_traceable_padj":"0.342445867045582","gene_id":"Ma03_g10900","corrected_median_effect":"0.35676879231292","corrected_median_base_mean":"766.742686694126","protein_length":"617.0","base_bin":"3","length_bin":"4","family":"EIL"}

search_text:
MaEIL11 | GSMUA_Achr3P11160_001 | True | high_confidence_alignment | Best local protein alignment; inspect runner-up margin | 571.0 | Ma03_p10900.1 | Ma03_g10900 | False | 1.0 | 1.0 | 0.9254457050243112 | Ma03_p10900.1 | 48.0 | 571.0 | 1.0 | 0.9254457050243112 | 0.9612794612794612 | 3018.0 | 0.9254457050243112 | 0.9254457050243112 | 0.9612794612794612 | False | 766.742686694126 | 0.35676879231292 | True | 766.742686694126 | 0.349828437615216 | 0.342445867045582 | Ma03_g10900 | 0.35676879231292 | 766.742686694126 | 617.0 | 3 | 4 | EIL


record_id: DS006_R00011
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEIL12","v1_protein_id":"GSMUA_Achr8P25580_001","v1_record_found":"True","mapping_confidence":"exact_protein_sequence","mapping_boundary":"Sequence identity; gene models may have multiple isoforms","v1_protein_length":"616.0","v2_protein_id":"Ma08_p26350.1","v2_gene_id":"Ma08_g26350","exact_sequence_match":"True","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"","seed_hits":"","matching_residues":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity_min_coverage":"","runner_up_sw_identity_min_coverage":"","runner_up_symmetric_exact_coverage":"","in_robust_axis":"False","axis_module":"","axis_swiss_prot_annotation":"","corrected_median_base_mean_mapping":"336.745280231889","corrected_median_effect_mapping":"-0.710034703105105","corrected_direction_stable":"True","five_traceable_base_mean":"336.745280231889","five_traceable_shrunk_effect":"-0.723176740009818","five_traceable_padj":"0.0159868503635938","gene_id":"Ma08_g26350","corrected_median_effect":"-0.710034703105105","corrected_median_base_mean":"336.745280231889","protein_length":"616.0","base_bin":"2","length_bin":"4","family":"EIL"}

search_text:
MaEIL12 | GSMUA_Achr8P25580_001 | True | exact_protein_sequence | Sequence identity; gene models may have multiple isoforms | 616.0 | Ma08_p26350.1 | Ma08_g26350 | True | 1.0 | 1.0 | 1.0 | False | 336.745280231889 | -0.710034703105105 | True | 336.745280231889 | -0.723176740009818 | 0.0159868503635938 | Ma08_g26350 | -0.710034703105105 | 336.745280231889 | 616.0 | 2 | 4 | EIL


record_id: DS006_R00012
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEIL13","v1_protein_id":"GSMUA_Achr7P21630_001","v1_record_found":"True","mapping_confidence":"exact_protein_sequence","mapping_boundary":"Sequence identity; gene models may have multiple isoforms","v1_protein_length":"655.0","v2_protein_id":"Ma07_p23150.1","v2_gene_id":"Ma07_g23150","exact_sequence_match":"True","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"","seed_hits":"","matching_residues":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity_min_coverage":"","runner_up_sw_identity_min_coverage":"","runner_up_symmetric_exact_coverage":"","in_robust_axis":"False","axis_module":"","axis_swiss_prot_annotation":"","corrected_median_base_mean_mapping":"165.443737821325","corrected_median_effect_mapping":"-0.563968595908312","corrected_direction_stable":"True","five_traceable_base_mean":"163.461408723607","five_traceable_shrunk_effect":"-0.689839955813311","five_traceable_padj":"0.0356663897536437","gene_id":"Ma07_g23150","corrected_median_effect":"-0.563968595908312","corrected_median_base_mean":"165.443737821325","protein_length":"655.0","base_bin":"1","length_bin":"4","family":"EIL"}

search_text:
MaEIL13 | GSMUA_Achr7P21630_001 | True | exact_protein_sequence | Sequence identity; gene models may have multiple isoforms | 655.0 | Ma07_p23150.1 | Ma07_g23150 | True | 1.0 | 1.0 | 1.0 | False | 165.443737821325 | -0.563968595908312 | True | 163.461408723607 | -0.689839955813311 | 0.0356663897536437 | Ma07_g23150 | -0.563968595908312 | 165.443737821325 | 655.0 | 1 | 4 | EIL


record_id: DS006_R00013
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEBF1","v1_protein_id":"GSMUA_Achr2P15920_001","v1_record_found":"True","mapping_confidence":"high_confidence_alignment","mapping_boundary":"Best local protein alignment; inspect runner-up margin","v1_protein_length":"668.0","v2_protein_id":"Ma02_p17690.1","v2_gene_id":"Ma02_g17690","exact_sequence_match":"False","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"0.9311377245508982","sw_target_coverage":"1.0","target_id":"Ma02_p17690.1","seed_hits":"43.0","matching_residues":"622.0","query_exact_coverage":"0.9311377245508982","target_exact_coverage":"0.9496183206106872","symmetric_exact_coverage":"0.9402872260015116","sw_score":"3117.0","sw_identity_min_coverage":"0.9311377245508982","runner_up_sw_identity_min_coverage":"0.7686775076664119","runner_up_symmetric_exact_coverage":"0.7803030303030303","in_robust_axis":"False","axis_module":"","axis_swiss_prot_annotation":"","corrected_median_base_mean_mapping":"12916.7588790835","corrected_median_effect_mapping":"0.79459495001994","corrected_direction_stable":"True","five_traceable_base_mean":"12916.7588790835","five_traceable_shrunk_effect":"0.792711516500881","five_traceable_padj":"7.81935043962785e-05","gene_id":"Ma02_g17690","corrected_median_effect":"0.79459495001994","corrected_median_base_mean":"12916.7588790835","protein_length":"655.0","base_bin":"4","length_bin":"4","family":"EBF"}

search_text:
MaEBF1 | GSMUA_Achr2P15920_001 | True | high_confidence_alignment | Best local protein alignment; inspect runner-up margin | 668.0 | Ma02_p17690.1 | Ma02_g17690 | False | 1.0 | 0.9311377245508982 | 1.0 | Ma02_p17690.1 | 43.0 | 622.0 | 0.9311377245508982 | 0.9496183206106872 | 0.9402872260015116 | 3117.0 | 0.9311377245508982 | 0.7686775076664119 | 0.7803030303030303 | False | 12916.7588790835 | 0.79459495001994 | True | 12916.7588790835 | 0.792711516500881 | 7.81935043962785e-05 | Ma02_g17690 | 0.79459495001994 | 12916.7588790835 | 655.0 | 4 | 4 | EBF


record_id: DS006_R00014
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEBF2","v1_protein_id":"GSMUA_Achr6P05220_001","v1_record_found":"True","mapping_confidence":"exact_protein_sequence","mapping_boundary":"Sequence identity; gene models may have multiple isoforms","v1_protein_length":"654.0","v2_protein_id":"Ma06_p06840.1","v2_gene_id":"Ma06_g06840","exact_sequence_match":"True","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"","seed_hits":"","matching_residues":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity_min_coverage":"","runner_up_sw_identity_min_coverage":"","runner_up_symmetric_exact_coverage":"","in_robust_axis":"False","axis_module":"","axis_swiss_prot_annotation":"","corrected_median_base_mean_mapping":"4638.19932450399","corrected_median_effect_mapping":"0.0262467811136075","corrected_direction_stable":"True","five_traceable_base_mean":"4638.19932450399","five_traceable_shrunk_effect":"0.0262467811136075","five_traceable_padj":"0.941117782096601","gene_id":"Ma06_g06840","corrected_median_effect":"0.0262467811136075","corrected_median_base_mean":"4638.19932450399","protein_length":"654.0","base_bin":"4","length_bin":"4","family":"EBF"}

search_text:
MaEBF2 | GSMUA_Achr6P05220_001 | True | exact_protein_sequence | Sequence identity; gene models may have multiple isoforms | 654.0 | Ma06_p06840.1 | Ma06_g06840 | True | 1.0 | 1.0 | 1.0 | False | 4638.19932450399 | 0.0262467811136075 | True | 4638.19932450399 | 0.0262467811136075 | 0.941117782096601 | Ma06_g06840 | 0.0262467811136075 | 4638.19932450399 | 654.0 | 4 | 4 | EBF


record_id: DS006_R00015
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEBF3","v1_protein_id":"GSMUA_Achr4P30680_001","v1_record_found":"True","mapping_confidence":"exact_protein_sequence","mapping_boundary":"Sequence identity; gene models may have multiple isoforms","v1_protein_length":"652.0","v2_protein_id":"Ma04_p37200.1","v2_gene_id":"Ma04_g37200","exact_sequence_match":"True","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"","seed_hits":"","matching_residues":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity_min_coverage":"","runner_up_sw_identity_min_coverage":"","runner_up_symmetric_exact_coverage":"","in_robust_axis":"True","axis_module":"Lipid-ethylene metabolism","axis_swiss_prot_annotation":"EIN3-binding F-box protein 1","corrected_median_base_mean_mapping":"6833.47122327604","corrected_median_effect_mapping":"1.54184863805568","corrected_direction_stable":"True","five_traceable_base_mean":"7012.87454899634","five_traceable_shrunk_effect":"1.5739126091125","five_traceable_padj":"1.44904043624032e-18","gene_id":"Ma04_g37200","corrected_median_effect":"1.54184863805568","corrected_median_base_mean":"6833.47122327604","protein_length":"652.0","base_bin":"4","length_bin":"4","family":"EBF"}

search_text:
MaEBF3 | GSMUA_Achr4P30680_001 | True | exact_protein_sequence | Sequence identity; gene models may have multiple isoforms | 652.0 | Ma04_p37200.1 | Ma04_g37200 | True | 1.0 | 1.0 | 1.0 | True | Lipid-ethylene metabolism | EIN3-binding F-box protein 1 | 6833.47122327604 | 1.54184863805568 | True | 7012.87454899634 | 1.5739126091125 | 1.44904043624032e-18 | Ma04_g37200 | 1.54184863805568 | 6833.47122327604 | 652.0 | 4 | 4 | EBF


record_id: DS006_R00016
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEBF4","v1_protein_id":"GSMUA_Achr9P28510_001","v1_record_found":"True","mapping_confidence":"exact_protein_sequence","mapping_boundary":"Sequence identity; gene models may have multiple isoforms","v1_protein_length":"654.0","v2_protein_id":"Ma09_p29140.1","v2_gene_id":"Ma09_g29140","exact_sequence_match":"True","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"","seed_hits":"","matching_residues":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity_min_coverage":"","runner_up_sw_identity_min_coverage":"","runner_up_symmetric_exact_coverage":"","in_robust_axis":"True","axis_module":"Lipid-ethylene metabolism","axis_swiss_prot_annotation":"EIN3-binding F-box protein 1","corrected_median_base_mean_mapping":"3066.29403405763","corrected_median_effect_mapping":"1.01898879292123","corrected_direction_stable":"True","five_traceable_base_mean":"3066.29403405763","five_traceable_shrunk_effect":"1.01898879292123","five_traceable_padj":"4.43706282290134e-08","gene_id":"Ma09_g29140","corrected_median_effect":"1.01898879292123","corrected_median_base_mean":"3066.29403405763","protein_length":"654.0","base_bin":"4","length_bin":"4","family":"EBF"}

search_text:
MaEBF4 | GSMUA_Achr9P28510_001 | True | exact_protein_sequence | Sequence identity; gene models may have multiple isoforms | 654.0 | Ma09_p29140.1 | Ma09_g29140 | True | 1.0 | 1.0 | 1.0 | True | Lipid-ethylene metabolism | EIN3-binding F-box protein 1 | 3066.29403405763 | 1.01898879292123 | True | 3066.29403405763 | 1.01898879292123 | 4.43706282290134e-08 | Ma09_g29140 | 1.01898879292123 | 3066.29403405763 | 654.0 | 4 | 4 | EBF


record_id: DS006_R00017
dataset_id: DS006
record_json:
{"jourda_gene_name":"MaEBF5","v1_protein_id":"GSMUA_Achr10P26950_001","v1_record_found":"True","mapping_confidence":"exact_protein_sequence","mapping_boundary":"Sequence identity; gene models may have multiple isoforms","v1_protein_length":"668.0","v2_protein_id":"Ma10_p26870.1","v2_gene_id":"Ma10_g26870","exact_sequence_match":"True","alternative_exact_v2_proteins":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","target_id":"","seed_hits":"","matching_residues":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity_min_coverage":"","runner_up_sw_identity_min_coverage":"","runner_up_symmetric_exact_coverage":"","in_robust_axis":"False","axis_module":"","axis_swiss_prot_annotation":"","corrected_median_base_mean_mapping":"4146.01828714563","corrected_median_effect_mapping":"0.760185741232424","corrected_direction_stable":"True","five_traceable_base_mean":"4146.01828714563","five_traceable_shrunk_effect":"0.760185741232424","five_traceable_padj":"0.0036110265908744","gene_id":"Ma10_g26870","corrected_median_effect":"0.760185741232424","corrected_median_base_mean":"4146.01828714563","protein_length":"668.0","base_bin":"4","length_bin":"4","family":"EBF"}

search_text:
MaEBF5 | GSMUA_Achr10P26950_001 | True | exact_protein_sequence | Sequence identity; gene models may have multiple isoforms | 668.0 | Ma10_p26870.1 | Ma10_g26870 | True | 1.0 | 1.0 | 1.0 | False | 4146.01828714563 | 0.760185741232424 | True | 4146.01828714563 | 0.760185741232424 | 0.0036110265908744 | Ma10_g26870 | 0.760185741232424 | 4146.01828714563 | 668.0 | 4 | 4 | EBF


record_id: DS007_R00001
dataset_id: DS007
record_json:
{"v1_protein_id":"GSMUA_Achr9P26550_001","source_sheet":"Panel List genes","v1_chromosome":"9","v1_start":"30924497","v1_stop":"30934974","functional_annotation":"kinesin motor domain containing protein","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma09_p27130.1","v2_gene_ids":"Ma09_g27130","query_exact_coverage":"0.9823788546255506","target_exact_coverage":"0.9246717346233587","symmetric_exact_coverage":"0.9526521893912424","sw_score":"6588","sw_identity":"0.9985052316890882","sw_query_coverage":"0.9897209985315712","sw_target_coverage":"1.0","sw_identity_min_coverage":"0.9882415949463222","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.6152","gene_id":"Ma09_g27130","robust_pathway_count":"3","robust_module_count":"1","modules":"Cell cycle and microtubules","pathways":"GO:0003777 | microtubule motor activity;GO:0005874 | microtubule;GO:0007018 | microtubule-based movement","all_three_pathway_count":"3","GO_annotation":"Molecular Function: binding (GO:0005488);; ","Swiss_Prot_annotation":"Kinesin-like protein KIN-12F","NR_annotation":"PREDICTED: kinesin-like protein KIN-12F [Musa acuminata subsp. malaccensis]","recovery_log2fc":"0.822156125128766","recovery_shrunk_log2fc":"0.288072984402704","recovery_padj":"0.712159664524345","reciprocal_log2fc":"-0.934397233691494","reciprocal_shrunk_log2fc":"-0.885551112663047","reciprocal_padj":"2.98180548801716e-05","exclude_pair_log2fc":"-0.913951414799831","exclude_pair_shrunk_log2fc":"-0.827472822909154","exclude_pair_padj":"0.0156171366760498","five_traceable_log2fc":"-0.889617276339446","five_traceable_shrunk_log2fc":"-0.842802811093616","five_traceable_padj":"0.0003976083688366","paper_counts_log2fc":"-0.816143944770415","paper_counts_shrunk_log2fc":"-0.798097069817333","paper_counts_padj":"8.67016039404651e-08","corrected_effect_direction_stable":"True","opposite_recovery_vs_corrected":"True"}

search_text:
GSMUA_Achr9P26550_001 | Panel List genes | 9 | 30924497 | 30934974 | kinesin motor domain containing protein | True | bidirectional_exact_block_similarity | high | Ma09_p27130.1 | Ma09_g27130 | 0.9823788546255506 | 0.9246717346233587 | 0.9526521893912424 | 6588 | 0.9985052316890882 | 0.9897209985315712 | 1.0 | 0.9882415949463222 | True | Smith-Waterman composite top-vs-runner-up margin=0.6152 | Ma09_g27130 | 3 | 1 | Cell cycle and microtubules | GO:0003777 | microtubule motor activity;GO:0005874 | microtubule;GO:0007018 | microtubule-based movement | 3 | Molecular Function: binding (GO:0005488);;  | Kinesin-like protein KIN-12F | PREDICTED: kinesin-like protein KIN-12F [Musa acuminata subsp. malaccensis] | 0.822156125128766 | 0.288072984402704 | 0.712159664524345 | -0.934397233691494 | -0.885551112663047 | 2.98180548801716e-05 | -0.913951414799831 | -0.827472822909154 | 0.0156171366760498 | -0.889617276339446 | -0.842802811093616 | 0.0003976083688366 | -0.816143944770415 | -0.798097069817333 | 8.67016039404651e-08 | True | True


record_id: DS008_R00001
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr1P02580_001","source_sheet":"Panel List genes","v1_chromosome":"1","v1_start":"2130903","v1_stop":"2137838","functional_annotation":"Thaumatin-like protein 1a","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma04_p22390.2","v2_gene_ids":"Ma04_g22390","query_exact_coverage":"0.47430249632892807","target_exact_coverage":"1.0","symmetric_exact_coverage":"0.6434262948207171","sw_score":"1676","sw_identity":"1.0","sw_query_coverage":"0.5154185022026432","sw_target_coverage":"1.0","sw_identity_min_coverage":"0.5154185022026432","reciprocal_best":"False","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0000"}

search_text:
GSMUA_Achr1P02580_001 | Panel List genes | 1 | 2130903 | 2137838 | Thaumatin-like protein 1a | True | bidirectional_exact_block_similarity | low | Ma04_p22390.2 | Ma04_g22390 | 0.47430249632892807 | 1.0 | 0.6434262948207171 | 1676 | 1.0 | 0.5154185022026432 | 1.0 | 0.5154185022026432 | False | Smith-Waterman composite top-vs-runner-up margin=0.0000


record_id: DS008_R00002
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr1P02590_001","source_sheet":"Panel List genes","v1_chromosome":"1","v1_start":"2139836","v1_stop":"2139916","functional_annotation":"Translation initiation factor IF-2","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma04_p22400.1","v2_gene_ids":"Ma04_g22400","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr1P02590_001 | Panel List genes | 1 | 2139836 | 2139916 | Translation initiation factor IF-2 | True | exact_protein_sequence | high | Ma04_p22400.1 | Ma04_g22400 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00003
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr1P02610_001","source_sheet":"Panel List genes","v1_chromosome":"1","v1_start":"2145683","v1_stop":"2156635","functional_annotation":"E3 ubiquitin-protein ligase UPL3","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma04_p22410.3","v2_gene_ids":"Ma04_g22410","query_exact_coverage":"0.9773727215587681","target_exact_coverage":"0.822316234796404","symmetric_exact_coverage":"0.8931648477886273","sw_score":"7641","sw_identity":"0.9759645793801391","sw_query_coverage":"0.9956002514142049","sw_target_coverage":"0.8598625066102591","sw_identity_min_coverage":"0.8391953495886336","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0000"}

search_text:
GSMUA_Achr1P02610_001 | Panel List genes | 1 | 2145683 | 2156635 | E3 ubiquitin-protein ligase UPL3 | True | bidirectional_exact_block_similarity | low | Ma04_p22410.3 | Ma04_g22410 | 0.9773727215587681 | 0.822316234796404 | 0.8931648477886273 | 7641 | 0.9759645793801391 | 0.9956002514142049 | 0.8598625066102591 | 0.8391953495886336 | True | Smith-Waterman composite top-vs-runner-up margin=0.0000


record_id: DS008_R00004
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr1P02620_001","source_sheet":"Panel List genes","v1_chromosome":"1","v1_start":"2160927","v1_stop":"2164757","functional_annotation":"Rac-like GTP-binding protein 5","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma04_p22420.1","v2_gene_ids":"Ma04_g22420","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr1P02620_001 | Panel List genes | 1 | 2160927 | 2164757 | Rac-like GTP-binding protein 5 | True | exact_protein_sequence | high | Ma04_p22420.1 | Ma04_g22420 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00005
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr1P02640_001","source_sheet":"Panel List genes","v1_chromosome":"1","v1_start":"2168372","v1_stop":"2168884","functional_annotation":"Putative Protein FD","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma04_p22430.1","v2_gene_ids":"Ma04_g22430","query_exact_coverage":"0.9664429530201343","target_exact_coverage":"0.5714285714285714","symmetric_exact_coverage":"0.7182044887780549","sw_score":"710","sw_identity":"0.9928571428571429","sw_query_coverage":"0.9395973154362416","sw_target_coverage":"0.6388888888888888","sw_identity_min_coverage":"0.6343253968253968","reciprocal_best":"False","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.6343"}

search_text:
GSMUA_Achr1P02640_001 | Panel List genes | 1 | 2168372 | 2168884 | Putative Protein FD | True | bidirectional_exact_block_similarity | low | Ma04_p22430.1 | Ma04_g22430 | 0.9664429530201343 | 0.5714285714285714 | 0.7182044887780549 | 710 | 0.9928571428571429 | 0.9395973154362416 | 0.6388888888888888 | 0.6343253968253968 | False | Smith-Waterman composite top-vs-runner-up margin=0.6343


record_id: DS008_R00006
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr1P02650_001","source_sheet":"Panel List genes","v1_chromosome":"1","v1_start":"2169774","v1_stop":"2170710","functional_annotation":"Expansin-A1~ EXPA1","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma04_p22440.1","v2_gene_ids":"Ma04_g22440","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr1P02650_001 | Panel List genes | 1 | 2169774 | 2170710 | Expansin-A1~ EXPA1 | True | exact_protein_sequence | high | Ma04_p22440.1 | Ma04_g22440 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00007
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr1P02660_001","source_sheet":"Panel List genes","v1_chromosome":"1","v1_start":"2172430","v1_stop":"2177366","functional_annotation":"24-methylenesterol C-methyltransferase 2","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma04_p22450.1","v2_gene_ids":"Ma04_g22450","query_exact_coverage":"0.31742243436754175","target_exact_coverage":"1.0","symmetric_exact_coverage":"0.48188405797101447","sw_score":"718","sw_identity":"1.0","sw_query_coverage":"0.31742243436754175","sw_target_coverage":"1.0","sw_identity_min_coverage":"0.31742243436754175","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.2625"}

search_text:
GSMUA_Achr1P02660_001 | Panel List genes | 1 | 2172430 | 2177366 | 24-methylenesterol C-methyltransferase 2 | True | bidirectional_exact_block_similarity | low | Ma04_p22450.1 | Ma04_g22450 | 0.31742243436754175 | 1.0 | 0.48188405797101447 | 718 | 1.0 | 0.31742243436754175 | 1.0 | 0.31742243436754175 | True | Smith-Waterman composite top-vs-runner-up margin=0.2625


record_id: DS008_R00008
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr1P02670_001","source_sheet":"Panel List genes","v1_chromosome":"1","v1_start":"2183446","v1_stop":"2183961","functional_annotation":"IQ calmodulin-binding motif ","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma04_p22470.1","v2_gene_ids":"Ma04_g22470","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr1P02670_001 | Panel List genes | 1 | 2183446 | 2183961 | IQ calmodulin-binding motif  | True | exact_protein_sequence | high | Ma04_p22470.1 | Ma04_g22470 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00009
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr1P02680_001","source_sheet":"Panel List genes","v1_chromosome":"1","v1_start":"2184660","v1_stop":"2193877","functional_annotation":"Electron carrier/ protein disulfide oxidoreductase","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma04_p22480.1","v2_gene_ids":"Ma04_g22480","query_exact_coverage":"0.9971751412429378","target_exact_coverage":"1.0","symmetric_exact_coverage":"0.9985855728429985","sw_score":"1813","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=1.0000"}

search_text:
GSMUA_Achr1P02680_001 | Panel List genes | 1 | 2184660 | 2193877 | Electron carrier/ protein disulfide oxidoreductase | True | bidirectional_exact_block_similarity | high | Ma04_p22480.1 | Ma04_g22480 | 0.9971751412429378 | 1.0 | 0.9985855728429985 | 1813 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=1.0000


record_id: DS008_R00010
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr1P02690_001","source_sheet":"Panel List genes","v1_chromosome":"1","v1_start":"2194462","v1_stop":"2196439","functional_annotation":"Dolichol-phosphate mannosyltransferase","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma04_p22490.2 | Ma04_p22490.1","v2_gene_ids":"Ma04_g22490","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr1P02690_001 | Panel List genes | 1 | 2194462 | 2196439 | Dolichol-phosphate mannosyltransferase | True | exact_protein_sequence | high | Ma04_p22490.2 | Ma04_p22490.1 | Ma04_g22490 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00011
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr1P02700_001","source_sheet":"Panel List genes","v1_chromosome":"1","v1_start":"2199001","v1_stop":"2207794","functional_annotation":"tRNA pseudouridine synthase Pus10","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"moderate","v2_protein_ids":"Ma04_p22500.1","v2_gene_ids":"Ma04_g22500","query_exact_coverage":"0.9907120743034056","target_exact_coverage":"0.5860805860805861","symmetric_exact_coverage":"0.7364787111622555","sw_score":"1606","sw_identity":"1.0","sw_query_coverage":"0.9535603715170279","sw_target_coverage":"0.5641025641025641","sw_identity_min_coverage":"0.5641025641025641","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.5641"}

search_text:
GSMUA_Achr1P02700_001 | Panel List genes | 1 | 2199001 | 2207794 | tRNA pseudouridine synthase Pus10 | True | bidirectional_exact_block_similarity | moderate | Ma04_p22500.1 | Ma04_g22500 | 0.9907120743034056 | 0.5860805860805861 | 0.7364787111622555 | 1606 | 1.0 | 0.9535603715170279 | 0.5641025641025641 | 0.5641025641025641 | True | Smith-Waterman composite top-vs-runner-up margin=0.5641


record_id: DS008_R00012
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr1P02710_001","source_sheet":"Panel List genes","v1_chromosome":"1","v1_start":"2207826","v1_stop":"2208882","functional_annotation":"NAC group 8a ","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma04_p22510.1","v2_gene_ids":"Ma04_g22510","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr1P02710_001 | Panel List genes | 1 | 2207826 | 2208882 | NAC group 8a  | True | exact_protein_sequence | high | Ma04_p22510.1 | Ma04_g22510 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00013
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01280_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"928964","v1_stop":"932813","functional_annotation":"Protein binding protein","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma03_p01170.4","v2_gene_ids":"Ma03_g01170","query_exact_coverage":"0.7563025210084033","target_exact_coverage":"1.0","symmetric_exact_coverage":"0.861244019138756","sw_score":"1443","sw_identity":"1.0","sw_query_coverage":"0.7563025210084033","sw_target_coverage":"1.0","sw_identity_min_coverage":"0.7563025210084033","reciprocal_best":"False","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0000"}

search_text:
GSMUA_Achr3P01280_001 | Panel List genes | 3 | 928964 | 932813 | Protein binding protein | True | bidirectional_exact_block_similarity | low | Ma03_p01170.4 | Ma03_g01170 | 0.7563025210084033 | 1.0 | 0.861244019138756 | 1443 | 1.0 | 0.7563025210084033 | 1.0 | 0.7563025210084033 | False | Smith-Waterman composite top-vs-runner-up margin=0.0000


record_id: DS008_R00014
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01290_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"938822","v1_stop":"940568","functional_annotation":"anaphase-promoting complex subunit 6-like","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma03_p01180.1","v2_gene_ids":"Ma03_g01180","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr3P01290_001 | Panel List genes | 3 | 938822 | 940568 | anaphase-promoting complex subunit 6-like | True | exact_protein_sequence | high | Ma03_p01180.1 | Ma03_g01180 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00015
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01300_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"945285","v1_stop":"947274","functional_annotation":"multicopper oxidase LPR1-like","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p01190.1","v2_gene_ids":"Ma03_g01190","query_exact_coverage":"1.0","target_exact_coverage":"0.9982698961937716","symmetric_exact_coverage":"0.9991341991341991","sw_score":"3085","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"0.9982698961937716","sw_identity_min_coverage":"0.9982698961937716","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.1644"}

search_text:
GSMUA_Achr3P01300_001 | Panel List genes | 3 | 945285 | 947274 | multicopper oxidase LPR1-like | True | bidirectional_exact_block_similarity | high | Ma03_p01190.1 | Ma03_g01190 | 1.0 | 0.9982698961937716 | 0.9991341991341991 | 3085 | 1.0 | 1.0 | 0.9982698961937716 | 0.9982698961937716 | True | Smith-Waterman composite top-vs-runner-up margin=0.1644


record_id: DS008_R00016
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01310_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"948966","v1_stop":"949605","functional_annotation":"Pathogenesis-related genes transcriptional activator PTI6-like ","v1_sequence_found":"True","mapping_method":"unmapped","mapping_confidence":"none","v2_protein_ids":"","v2_gene_ids":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity":"","sw_query_coverage":"","sw_target_coverage":"","sw_identity_min_coverage":"","reciprocal_best":"False","mapping_note":"no target shared a sampled 15-aa exact block"}

search_text:
GSMUA_Achr3P01310_001 | Panel List genes | 3 | 948966 | 949605 | Pathogenesis-related genes transcriptional activator PTI6-like  | True | unmapped | none | False | no target shared a sampled 15-aa exact block


record_id: DS008_R00017
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01320_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"950798","v1_stop":"951393","functional_annotation":"Hypothetical protein","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma03_p01210.1","v2_gene_ids":"Ma03_g01210","query_exact_coverage":"0.8222222222222222","target_exact_coverage":"0.6032608695652174","symmetric_exact_coverage":"0.6959247648902821","sw_score":"547","sw_identity":"0.981651376146789","sw_query_coverage":"0.8074074074074075","sw_target_coverage":"0.592391304347826","sw_identity_min_coverage":"0.5815217391304347","reciprocal_best":"False","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.1385"}

search_text:
GSMUA_Achr3P01320_001 | Panel List genes | 3 | 950798 | 951393 | Hypothetical protein | True | bidirectional_exact_block_similarity | low | Ma03_p01210.1 | Ma03_g01210 | 0.8222222222222222 | 0.6032608695652174 | 0.6959247648902821 | 547 | 0.981651376146789 | 0.8074074074074075 | 0.592391304347826 | 0.5815217391304347 | False | Smith-Waterman composite top-vs-runner-up margin=0.1385


record_id: DS008_R00018
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01340_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"955755","v1_stop":"960796","functional_annotation":"Checkpoint serine/threonine-protein kinase BUB1","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma06_p21840.1","v2_gene_ids":"Ma06_g21840","query_exact_coverage":"0.794435857805255","target_exact_coverage":"0.948339483394834","symmetric_exact_coverage":"0.864592094196804","sw_score":"2619","sw_identity":"0.9624765478424016","sw_query_coverage":"0.8238021638330757","sw_target_coverage":"0.996309963099631","sw_identity_min_coverage":"0.7928902627511591","reciprocal_best":"False","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0726"}

search_text:
GSMUA_Achr3P01340_001 | Panel List genes | 3 | 955755 | 960796 | Checkpoint serine/threonine-protein kinase BUB1 | True | bidirectional_exact_block_similarity | low | Ma06_p21840.1 | Ma06_g21840 | 0.794435857805255 | 0.948339483394834 | 0.864592094196804 | 2619 | 0.9624765478424016 | 0.8238021638330757 | 0.996309963099631 | 0.7928902627511591 | False | Smith-Waterman composite top-vs-runner-up margin=0.0726


record_id: DS008_R00019
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01350_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"961998","v1_stop":"962537","functional_annotation":"Zinc finger protein STAMENLESS 1-like ","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma03_p01240.1","v2_gene_ids":"Ma03_g01240","query_exact_coverage":"0.8017241379310345","target_exact_coverage":"0.5636363636363636","symmetric_exact_coverage":"0.6619217081850534","sw_score":"419","sw_identity":"0.9885057471264368","sw_query_coverage":"0.9051724137931034","sw_target_coverage":"0.5272727272727272","sw_identity_min_coverage":"0.5212121212121211","reciprocal_best":"False","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.2625"}

search_text:
GSMUA_Achr3P01350_001 | Panel List genes | 3 | 961998 | 962537 | Zinc finger protein STAMENLESS 1-like  | True | bidirectional_exact_block_similarity | low | Ma03_p01240.1 | Ma03_g01240 | 0.8017241379310345 | 0.5636363636363636 | 0.6619217081850534 | 419 | 0.9885057471264368 | 0.9051724137931034 | 0.5272727272727272 | 0.5212121212121211 | False | Smith-Waterman composite top-vs-runner-up margin=0.2625


record_id: DS008_R00020
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01360_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"971624","v1_stop":"973468","functional_annotation":"Pentatricopeptide repeat-containing protein","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p01250.1","v2_gene_ids":"Ma03_g01250","query_exact_coverage":"1.0","target_exact_coverage":"0.8452768729641694","symmetric_exact_coverage":"0.9161518093556928","sw_score":"2546","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=1.0000"}

search_text:
GSMUA_Achr3P01360_001 | Panel List genes | 3 | 971624 | 973468 | Pentatricopeptide repeat-containing protein | True | bidirectional_exact_block_similarity | high | Ma03_p01250.1 | Ma03_g01250 | 1.0 | 0.8452768729641694 | 0.9161518093556928 | 2546 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=1.0000


record_id: DS008_R00021
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01370_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"977749","v1_stop":"979992","functional_annotation":"Transcription factor MYB21","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma08_p17860.1","v2_gene_ids":"Ma08_g17860","query_exact_coverage":"0.9112903225806451","target_exact_coverage":"0.4538152610441767","symmetric_exact_coverage":"0.6058981233243967","sw_score":"586","sw_identity":"0.8974358974358975","sw_query_coverage":"0.9435483870967742","sw_target_coverage":"0.46987951807228917","sw_identity_min_coverage":"0.42168674698795183","reciprocal_best":"False","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0203"}

search_text:
GSMUA_Achr3P01370_001 | Panel List genes | 3 | 977749 | 979992 | Transcription factor MYB21 | True | bidirectional_exact_block_similarity | low | Ma08_p17860.1 | Ma08_g17860 | 0.9112903225806451 | 0.4538152610441767 | 0.6058981233243967 | 586 | 0.8974358974358975 | 0.9435483870967742 | 0.46987951807228917 | 0.42168674698795183 | False | Smith-Waterman composite top-vs-runner-up margin=0.0203


record_id: DS008_R00022
dataset_id: DS008
record_json:
{"v1_protein_id":"Unpredicted","source_sheet":"Panel List genes","v1_chromosome":"11","v1_start":"15228286","v1_stop":"15228618","functional_annotation":"Protein phosphatase 1 regulatory subunit","v1_sequence_found":"False","mapping_method":"unmapped","mapping_confidence":"none","v2_protein_ids":"","v2_gene_ids":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity":"","sw_query_coverage":"","sw_target_coverage":"","sw_identity_min_coverage":"","reciprocal_best":"False","mapping_note":"v1 protein absent from Ensembl Plants release 24 protein FASTA"}

search_text:
Unpredicted | Panel List genes | 11 | 15228286 | 15228618 | Protein phosphatase 1 regulatory subunit | False | unmapped | none | False | v1 protein absent from Ensembl Plants release 24 protein FASTA


record_id: DS008_R00023
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01380_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"988332","v1_stop":"989227","functional_annotation":"Putative expressed protein","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma03_p01280.1 | Ma03_p01280.2","v2_gene_ids":"Ma03_g01280","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr3P01380_001 | Panel List genes | 3 | 988332 | 989227 | Putative expressed protein | True | exact_protein_sequence | high | Ma03_p01280.1 | Ma03_p01280.2 | Ma03_g01280 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00024
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01390_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"992632","v1_stop":"993553","functional_annotation":"diacylglycerol kinase kappa-like","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p01290.1","v2_gene_ids":"Ma03_g01290","query_exact_coverage":"1.0","target_exact_coverage":"0.9153846153846154","symmetric_exact_coverage":"0.9558232931726908","sw_score":"1190","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.2689"}

search_text:
GSMUA_Achr3P01390_001 | Panel List genes | 3 | 992632 | 993553 | diacylglycerol kinase kappa-like | True | bidirectional_exact_block_similarity | high | Ma03_p01290.1 | Ma03_g01290 | 1.0 | 0.9153846153846154 | 0.9558232931726908 | 1190 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=0.2689


record_id: DS008_R00025
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01410_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"995777","v1_stop":"997954","functional_annotation":"DEAD-box ATP-dependent RNA helicase 21","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p01300.1","v2_gene_ids":"Ma03_g01300","query_exact_coverage":"1.0","target_exact_coverage":"0.7268965517241379","symmetric_exact_coverage":"0.84185303514377","sw_score":"2457","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=1.0000"}

search_text:
GSMUA_Achr3P01410_001 | Panel List genes | 3 | 995777 | 997954 | DEAD-box ATP-dependent RNA helicase 21 | True | bidirectional_exact_block_similarity | high | Ma03_p01300.1 | Ma03_g01300 | 1.0 | 0.7268965517241379 | 0.84185303514377 | 2457 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=1.0000


record_id: DS008_R00026
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01420_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"1001943","v1_stop":"1006422","functional_annotation":"ATA15 protein","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p01310.1","v2_gene_ids":"Ma03_g01310","query_exact_coverage":"1.0","target_exact_coverage":"0.8456221198156681","symmetric_exact_coverage":"0.916354556803995","sw_score":"1871","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"0.8456221198156681","sw_identity_min_coverage":"0.8456221198156681","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.8456"}

search_text:
GSMUA_Achr3P01420_001 | Panel List genes | 3 | 1001943 | 1006422 | ATA15 protein | True | bidirectional_exact_block_similarity | high | Ma03_p01310.1 | Ma03_g01310 | 1.0 | 0.8456221198156681 | 0.916354556803995 | 1871 | 1.0 | 1.0 | 0.8456221198156681 | 0.8456221198156681 | True | Smith-Waterman composite top-vs-runner-up margin=0.8456


record_id: DS008_R00027
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P01430_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"1009710","v1_stop":"1014715","functional_annotation":"Vacuolar protein sorting-associated protein 4","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p01320.1","v2_gene_ids":"Ma03_g01320","query_exact_coverage":"1.0","target_exact_coverage":"0.9491916859122402","symmetric_exact_coverage":"0.9739336492890995","sw_score":"2109","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0389"}

search_text:
GSMUA_Achr3P01430_001 | Panel List genes | 3 | 1009710 | 1014715 | Vacuolar protein sorting-associated protein 4 | True | bidirectional_exact_block_similarity | high | Ma03_p01320.1 | Ma03_g01320 | 1.0 | 0.9491916859122402 | 0.9739336492890995 | 2109 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=0.0389


record_id: DS008_R00028
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P21330_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"22323590","v1_stop":"22324642","functional_annotation":"VQ motif-containing family protein","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma03_p22270.1","v2_gene_ids":"Ma03_g22270","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr3P21330_001 | Panel List genes | 3 | 22323590 | 22324642 | VQ motif-containing family protein | True | exact_protein_sequence | high | Ma03_p22270.1 | Ma03_g22270 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00029
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P21340_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"22335207","v1_stop":"22341451","functional_annotation":"Apoptotic chromatin condensation inducer in the nucleus-like","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p22290.1","v2_gene_ids":"Ma03_g22290","query_exact_coverage":"0.9161676646706587","target_exact_coverage":"0.918918918918919","symmetric_exact_coverage":"0.9175412293853074","sw_score":"3108","sw_identity":"0.9967159277504105","sw_query_coverage":"0.9116766467065869","sw_target_coverage":"0.9714714714714715","sw_identity_min_coverage":"0.908682634730539","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.2549"}

search_text:
GSMUA_Achr3P21340_001 | Panel List genes | 3 | 22335207 | 22341451 | Apoptotic chromatin condensation inducer in the nucleus-like | True | bidirectional_exact_block_similarity | high | Ma03_p22290.1 | Ma03_g22290 | 0.9161676646706587 | 0.918918918918919 | 0.9175412293853074 | 3108 | 0.9967159277504105 | 0.9116766467065869 | 0.9714714714714715 | 0.908682634730539 | True | Smith-Waterman composite top-vs-runner-up margin=0.2549


record_id: DS008_R00030
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P21350_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"22341799","v1_stop":"22342236","functional_annotation":"40S ribosomal protein S16","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p22300.1","v2_gene_ids":"Ma03_g22300","query_exact_coverage":"1.0","target_exact_coverage":"0.6620689655172414","symmetric_exact_coverage":"0.7966804979253111","sw_score":"435","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0312"}

search_text:
GSMUA_Achr3P21350_001 | Panel List genes | 3 | 22341799 | 22342236 | 40S ribosomal protein S16 | True | bidirectional_exact_block_similarity | high | Ma03_p22300.1 | Ma03_g22300 | 1.0 | 0.6620689655172414 | 0.7966804979253111 | 435 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=0.0312


record_id: DS008_R00031
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P21360_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"22343432","v1_stop":"22350506","functional_annotation":"Expressed protein","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma03_p22310.1","v2_gene_ids":"Ma03_g22310","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr3P21360_001 | Panel List genes | 3 | 22343432 | 22350506 | Expressed protein | True | exact_protein_sequence | high | Ma03_p22310.1 | Ma03_g22310 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00032
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P21370_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"22355860","v1_stop":"22357053","functional_annotation":"Anaphase-promoting complex subunit cdc20","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p22320.1","v2_gene_ids":"Ma03_g22320","query_exact_coverage":"1.0","target_exact_coverage":"0.9520383693045563","symmetric_exact_coverage":"0.9754299754299754","sw_score":"2119","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"0.9520383693045563","sw_identity_min_coverage":"0.9520383693045563","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.2778"}

search_text:
GSMUA_Achr3P21370_001 | Panel List genes | 3 | 22355860 | 22357053 | Anaphase-promoting complex subunit cdc20 | True | bidirectional_exact_block_similarity | high | Ma03_p22320.1 | Ma03_g22320 | 1.0 | 0.9520383693045563 | 0.9754299754299754 | 2119 | 1.0 | 1.0 | 0.9520383693045563 | 0.9520383693045563 | True | Smith-Waterman composite top-vs-runner-up margin=0.2778


record_id: DS008_R00033
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P21380_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"22372199","v1_stop":"22379759","functional_annotation":"Leucine-rich repeat receptor-like protein kinase","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p22340.1","v2_gene_ids":"Ma03_g22340","query_exact_coverage":"0.954954954954955","target_exact_coverage":"0.9103053435114504","symmetric_exact_coverage":"0.93209574987787","sw_score":"4763","sw_identity":"0.9989517819706499","sw_query_coverage":"0.965965965965966","sw_target_coverage":"0.9990458015267175","sw_identity_min_coverage":"0.9649534230247019","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.1623"}

search_text:
GSMUA_Achr3P21380_001 | Panel List genes | 3 | 22372199 | 22379759 | Leucine-rich repeat receptor-like protein kinase | True | bidirectional_exact_block_similarity | high | Ma03_p22340.1 | Ma03_g22340 | 0.954954954954955 | 0.9103053435114504 | 0.93209574987787 | 4763 | 0.9989517819706499 | 0.965965965965966 | 0.9990458015267175 | 0.9649534230247019 | True | Smith-Waterman composite top-vs-runner-up margin=0.1623


record_id: DS008_R00034
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P21400_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"22388789","v1_stop":"22390192","functional_annotation":"15-cis-phytoene desaturase","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma03_p22360.1","v2_gene_ids":"Ma03_g22360","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr3P21400_001 | Panel List genes | 3 | 22388789 | 22390192 | 15-cis-phytoene desaturase | True | exact_protein_sequence | high | Ma03_p22360.1 | Ma03_g22360 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00035
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P21410_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"22398070","v1_stop":"22400013","functional_annotation":"Laccase-21","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p22370.1","v2_gene_ids":"Ma03_g22370","query_exact_coverage":"0.9978947368421053","target_exact_coverage":"0.8404255319148937","symmetric_exact_coverage":"0.9124157844080847","sw_score":"2533","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"0.9219858156028369","sw_identity_min_coverage":"0.9219858156028369","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.9220"}

search_text:
GSMUA_Achr3P21410_001 | Panel List genes | 3 | 22398070 | 22400013 | Laccase-21 | True | bidirectional_exact_block_similarity | high | Ma03_p22370.1 | Ma03_g22370 | 0.9978947368421053 | 0.8404255319148937 | 0.9124157844080847 | 2533 | 1.0 | 1.0 | 0.9219858156028369 | 0.9219858156028369 | True | Smith-Waterman composite top-vs-runner-up margin=0.9220


record_id: DS008_R00036
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22850_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23709726","v1_stop":"23712787","functional_annotation":"GABA transporter 1-like ","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma02_p03060.1","v2_gene_ids":"Ma02_g03060","query_exact_coverage":"0.6541850220264317","target_exact_coverage":"0.6387096774193548","symmetric_exact_coverage":"0.6463547334058759","sw_score":"1494","sw_identity":"0.8034682080924855","sw_query_coverage":"0.762114537444934","sw_target_coverage":"0.7440860215053764","sw_identity_min_coverage":"0.5978494623655914","reciprocal_best":"False","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0271"}

search_text:
GSMUA_Achr3P22850_001 | Panel List genes | 3 | 23709726 | 23712787 | GABA transporter 1-like  | True | bidirectional_exact_block_similarity | low | Ma02_p03060.1 | Ma02_g03060 | 0.6541850220264317 | 0.6387096774193548 | 0.6463547334058759 | 1494 | 0.8034682080924855 | 0.762114537444934 | 0.7440860215053764 | 0.5978494623655914 | False | Smith-Waterman composite top-vs-runner-up margin=0.0271


record_id: DS008_R00037
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22860_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23713549","v1_stop":"23722602","functional_annotation":"Putative 3-deoxy-D-manno-octulosonic-acid transferase~ waaA","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p24030.1","v2_gene_ids":"Ma03_g24030","query_exact_coverage":"1.0","target_exact_coverage":"0.9823788546255506","symmetric_exact_coverage":"0.9911111111111112","sw_score":"2292","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"0.9823788546255506","sw_identity_min_coverage":"0.9823788546255506","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.9824"}

search_text:
GSMUA_Achr3P22860_001 | Panel List genes | 3 | 23713549 | 23722602 | Putative 3-deoxy-D-manno-octulosonic-acid transferase~ waaA | True | bidirectional_exact_block_similarity | high | Ma03_p24030.1 | Ma03_g24030 | 1.0 | 0.9823788546255506 | 0.9911111111111112 | 2292 | 1.0 | 1.0 | 0.9823788546255506 | 0.9823788546255506 | True | Smith-Waterman composite top-vs-runner-up margin=0.9824


record_id: DS008_R00038
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22870_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23726805","v1_stop":"23729924","functional_annotation":"Putative expressed protein~ ARK1~ complete","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p24040.1","v2_gene_ids":"Ma03_g24040","query_exact_coverage":"1.0","target_exact_coverage":"0.9400479616306955","symmetric_exact_coverage":"0.969097651421508","sw_score":"3929","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.1936"}

search_text:
GSMUA_Achr3P22870_001 | Panel List genes | 3 | 23726805 | 23729924 | Putative expressed protein~ ARK1~ complete | True | bidirectional_exact_block_similarity | high | Ma03_p24040.1 | Ma03_g24040 | 1.0 | 0.9400479616306955 | 0.969097651421508 | 3929 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=0.1936


record_id: DS008_R00039
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22880_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23732085","v1_stop":"23741933","functional_annotation":"F-box/LRR-repeat protein","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p24050.1","v2_gene_ids":"Ma03_g24050","query_exact_coverage":"0.9296875","target_exact_coverage":"0.9834710743801653","symmetric_exact_coverage":"0.9558232931726908","sw_score":"3013","sw_identity":"0.9834710743801653","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"0.9834710743801653","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.9835"}

search_text:
GSMUA_Achr3P22880_001 | Panel List genes | 3 | 23732085 | 23741933 | F-box/LRR-repeat protein | True | bidirectional_exact_block_similarity | high | Ma03_p24050.1 | Ma03_g24050 | 0.9296875 | 0.9834710743801653 | 0.9558232931726908 | 3013 | 0.9834710743801653 | 1.0 | 1.0 | 0.9834710743801653 | True | Smith-Waterman composite top-vs-runner-up margin=0.9835


record_id: DS008_R00040
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22890_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23746642","v1_stop":"23747649","functional_annotation":"S-adenosylmethionine decarboxylase proenzyme 1~ SAMDC1","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma03_p24060.1","v2_gene_ids":"Ma03_g24060","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr3P22890_001 | Panel List genes | 3 | 23746642 | 23747649 | S-adenosylmethionine decarboxylase proenzyme 1~ SAMDC1 | True | exact_protein_sequence | high | Ma03_p24060.1 | Ma03_g24060 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00041
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22900_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23748318","v1_stop":"23754555","functional_annotation":"Macrophage erythroblast attacher~ MAEA","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma03_p24070.1","v2_gene_ids":"Ma03_g24070","query_exact_coverage":"1.0","target_exact_coverage":"0.9881796690307328","symmetric_exact_coverage":"0.9940546967895363","sw_score":"2133","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"0.9952718676122931","sw_identity_min_coverage":"0.9952718676122931","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0000"}

search_text:
GSMUA_Achr3P22900_001 | Panel List genes | 3 | 23748318 | 23754555 | Macrophage erythroblast attacher~ MAEA | True | bidirectional_exact_block_similarity | low | Ma03_p24070.1 | Ma03_g24070 | 1.0 | 0.9881796690307328 | 0.9940546967895363 | 2133 | 1.0 | 1.0 | 0.9952718676122931 | 0.9952718676122931 | True | Smith-Waterman composite top-vs-runner-up margin=0.0000


record_id: DS008_R00042
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22910_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23761542","v1_stop":"23761736","functional_annotation":"Histidine kinase 1~ AHK1","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma03_p24080.1","v2_gene_ids":"Ma03_g24080","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr3P22910_001 | Panel List genes | 3 | 23761542 | 23761736 | Histidine kinase 1~ AHK1 | True | exact_protein_sequence | high | Ma03_p24080.1 | Ma03_g24080 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00043
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22920_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23765387","v1_stop":"23769402","functional_annotation":"Putative Histidine kinase CKI1","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p24090.1","v2_gene_ids":"Ma03_g24090","query_exact_coverage":"0.9895833333333334","target_exact_coverage":"0.8970727101038716","symmetric_exact_coverage":"0.9410599306587419","sw_score":"4805","sw_identity":"0.9978925184404637","sw_query_coverage":"0.9885416666666667","sw_target_coverage":"0.9320113314447592","sw_identity_min_coverage":"0.9300471347504605","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.9300"}

search_text:
GSMUA_Achr3P22920_001 | Panel List genes | 3 | 23765387 | 23769402 | Putative Histidine kinase CKI1 | True | bidirectional_exact_block_similarity | high | Ma03_p24090.1 | Ma03_g24090 | 0.9895833333333334 | 0.8970727101038716 | 0.9410599306587419 | 4805 | 0.9978925184404637 | 0.9885416666666667 | 0.9320113314447592 | 0.9300471347504605 | True | Smith-Waterman composite top-vs-runner-up margin=0.9300


record_id: DS008_R00044
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22930_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23772808","v1_stop":"23772951","functional_annotation":"Hypothetical protein","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma03_p24100.1","v2_gene_ids":"Ma03_g24100","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr3P22930_001 | Panel List genes | 3 | 23772808 | 23772951 | Hypothetical protein | True | exact_protein_sequence | high | Ma03_p24100.1 | Ma03_g24100 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00045
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22940_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23775427","v1_stop":"23779780","functional_annotation":"Probable NADH dehydrogenase","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma03_p24110.1","v2_gene_ids":"Ma03_g24110","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr3P22940_001 | Panel List genes | 3 | 23775427 | 23779780 | Probable NADH dehydrogenase | True | exact_protein_sequence | high | Ma03_p24110.1 | Ma03_g24110 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00046
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22950_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23780168","v1_stop":"23785427","functional_annotation":"Dynein light chain LC6","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma03_p24120.1","v2_gene_ids":"Ma03_g24120","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr3P22950_001 | Panel List genes | 3 | 23780168 | 23785427 | Dynein light chain LC6 | True | exact_protein_sequence | high | Ma03_p24120.1 | Ma03_g24120 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00047
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22960_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23787206","v1_stop":"23788837","functional_annotation":"Expressed protein","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma03_p24130.1","v2_gene_ids":"Ma03_g24130","query_exact_coverage":"1.0","target_exact_coverage":"0.6869244935543278","symmetric_exact_coverage":"0.8144104803493449","sw_score":"1693","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=1.0000"}

search_text:
GSMUA_Achr3P22960_001 | Panel List genes | 3 | 23787206 | 23788837 | Expressed protein | True | bidirectional_exact_block_similarity | high | Ma03_p24130.1 | Ma03_g24130 | 1.0 | 0.6869244935543278 | 0.8144104803493449 | 1693 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=1.0000


record_id: DS008_R00048
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr3P22970_001","source_sheet":"Panel List genes","v1_chromosome":"3","v1_start":"23790284","v1_stop":"23793476","functional_annotation":"Predicted protein","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma03_p24140.1","v2_gene_ids":"Ma03_g24140","query_exact_coverage":"1.0","target_exact_coverage":"0.9288256227758007","symmetric_exact_coverage":"0.9630996309963099","sw_score":"1321","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0000"}

search_text:
GSMUA_Achr3P22970_001 | Panel List genes | 3 | 23790284 | 23793476 | Predicted protein | True | bidirectional_exact_block_similarity | low | Ma03_p24140.1 | Ma03_g24140 | 1.0 | 0.9288256227758007 | 0.9630996309963099 | 1321 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=0.0000


record_id: DS008_R00049
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr4P07150_001","source_sheet":"Panel List genes","v1_chromosome":"4","v1_start":"5304739","v1_stop":"5333399","functional_annotation":"myosin, putative, expressed~ myoJ","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma04_p07130.1","v2_gene_ids":"Ma04_g07130","query_exact_coverage":"0.7645885286783043","target_exact_coverage":"0.9986970684039088","symmetric_exact_coverage":"0.8661016949152542","sw_score":"7638","sw_identity":"0.9993438320209974","sw_query_coverage":"0.8239401496259352","sw_target_coverage":"0.9928338762214983","sw_identity_min_coverage":"0.8233995064831361","reciprocal_best":"False","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0589"}

search_text:
GSMUA_Achr4P07150_001 | Panel List genes | 4 | 5304739 | 5333399 | myosin, putative, expressed~ myoJ | True | bidirectional_exact_block_similarity | low | Ma04_p07130.1 | Ma04_g07130 | 0.7645885286783043 | 0.9986970684039088 | 0.8661016949152542 | 7638 | 0.9993438320209974 | 0.8239401496259352 | 0.9928338762214983 | 0.8233995064831361 | False | Smith-Waterman composite top-vs-runner-up margin=0.0589


record_id: DS008_R00050
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr4P07160_001","source_sheet":"Panel List genes","v1_chromosome":"4","v1_start":"5335156","v1_stop":"5339094","functional_annotation":"Methyltransferase-like protein 2","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma04_p07140.1","v2_gene_ids":"Ma04_g07140","query_exact_coverage":"0.9856459330143541","target_exact_coverage":"0.9809523809523809","symmetric_exact_coverage":"0.9832935560859188","sw_score":"2150","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0000"}

search_text:
GSMUA_Achr4P07160_001 | Panel List genes | 4 | 5335156 | 5339094 | Methyltransferase-like protein 2 | True | bidirectional_exact_block_similarity | low | Ma04_p07140.1 | Ma04_g07140 | 0.9856459330143541 | 0.9809523809523809 | 0.9832935560859188 | 2150 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=0.0000


record_id: DS008_R00051
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr4P07170_001","source_sheet":"Panel List genes","v1_chromosome":"4","v1_start":"5343205","v1_stop":"5343994","functional_annotation":"Homeodomain leucine zipper protein class 1~ HOX14","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma04_p07150.1","v2_gene_ids":"Ma04_g07150","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr4P07170_001 | Panel List genes | 4 | 5343205 | 5343994 | Homeodomain leucine zipper protein class 1~ HOX14 | True | exact_protein_sequence | high | Ma04_p07150.1 | Ma04_g07150 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00052
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr4P07180_001","source_sheet":"Panel List genes","v1_chromosome":"4","v1_start":"5344090","v1_stop":"5352872","functional_annotation":"Ethylene-responsive element-binding protein","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma04_p07160.1","v2_gene_ids":"Ma04_g07160","query_exact_coverage":"0.9391304347826087","target_exact_coverage":"0.8780487804878049","symmetric_exact_coverage":"0.907563025210084","sw_score":"1160","sw_identity":"0.9861111111111112","sw_query_coverage":"0.9391304347826087","sw_target_coverage":"0.8780487804878049","sw_identity_min_coverage":"0.8658536585365854","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.1180"}

search_text:
GSMUA_Achr4P07180_001 | Panel List genes | 4 | 5344090 | 5352872 | Ethylene-responsive element-binding protein | True | bidirectional_exact_block_similarity | high | Ma04_p07160.1 | Ma04_g07160 | 0.9391304347826087 | 0.8780487804878049 | 0.907563025210084 | 1160 | 0.9861111111111112 | 0.9391304347826087 | 0.8780487804878049 | 0.8658536585365854 | True | Smith-Waterman composite top-vs-runner-up margin=0.1180


record_id: DS008_R00053
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr4P07190_001","source_sheet":"Panel List genes","v1_chromosome":"4","v1_start":"5358776","v1_stop":"5360344","functional_annotation":"Putative Scarecrow-like protein 15~ SCL15","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma04_p07170.1","v2_gene_ids":"Ma04_g07170","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr4P07190_001 | Panel List genes | 4 | 5358776 | 5360344 | Putative Scarecrow-like protein 15~ SCL15 | True | exact_protein_sequence | high | Ma04_p07170.1 | Ma04_g07170 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00054
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr4P07200_001","source_sheet":"Panel List genes","v1_chromosome":"4","v1_start":"5364860","v1_stop":"5367289","functional_annotation":"C2H2-like zinc finger protein ","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma04_p07180.1","v2_gene_ids":"Ma04_g07180","query_exact_coverage":"0.924074074074074","target_exact_coverage":"0.9960079840319361","symmetric_exact_coverage":"0.9586935638808838","sw_score":"2592","sw_identity":"0.9979959919839679","sw_query_coverage":"0.9833333333333333","sw_target_coverage":"0.9960079840319361","sw_identity_min_coverage":"0.9813627254509018","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.2255"}

search_text:
GSMUA_Achr4P07200_001 | Panel List genes | 4 | 5364860 | 5367289 | C2H2-like zinc finger protein  | True | bidirectional_exact_block_similarity | high | Ma04_p07180.1 | Ma04_g07180 | 0.924074074074074 | 0.9960079840319361 | 0.9586935638808838 | 2592 | 0.9979959919839679 | 0.9833333333333333 | 0.9960079840319361 | 0.9813627254509018 | True | Smith-Waterman composite top-vs-runner-up margin=0.2255


record_id: DS008_R00055
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr4P07210_001","source_sheet":"Panel List genes","v1_chromosome":"4","v1_start":"5373617","v1_stop":"5380034","functional_annotation":"Eukaryotic aspartyl protease domain containing protein, expressed","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma04_p07190.1","v2_gene_ids":"Ma04_g07190","query_exact_coverage":"0.9910714285714286","target_exact_coverage":"0.8809523809523809","symmetric_exact_coverage":"0.9327731092436975","sw_score":"2955","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"0.8809523809523809","sw_identity_min_coverage":"0.8809523809523809","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.1993"}

search_text:
GSMUA_Achr4P07210_001 | Panel List genes | 4 | 5373617 | 5380034 | Eukaryotic aspartyl protease domain containing protein, expressed | True | bidirectional_exact_block_similarity | high | Ma04_p07190.1 | Ma04_g07190 | 0.9910714285714286 | 0.8809523809523809 | 0.9327731092436975 | 2955 | 1.0 | 1.0 | 0.8809523809523809 | 0.8809523809523809 | True | Smith-Waterman composite top-vs-runner-up margin=0.1993


record_id: DS008_R00056
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr4P07220_001","source_sheet":"Panel List genes","v1_chromosome":"4","v1_start":"5386015","v1_stop":"5388073","functional_annotation":"Probable indole-3-acetic acid-amido synthetase GH3.8","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma04_p07200.1","v2_gene_ids":"Ma04_g07200","query_exact_coverage":"1.0","target_exact_coverage":"0.926829268292683","symmetric_exact_coverage":"0.9620253164556962","sw_score":"2882","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0775"}

search_text:
GSMUA_Achr4P07220_001 | Panel List genes | 4 | 5386015 | 5388073 | Probable indole-3-acetic acid-amido synthetase GH3.8 | True | bidirectional_exact_block_similarity | high | Ma04_p07200.1 | Ma04_g07200 | 1.0 | 0.926829268292683 | 0.9620253164556962 | 2882 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=0.0775


record_id: DS008_R00057
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr4P07230_001","source_sheet":"Panel List genes","v1_chromosome":"4","v1_start":"5396511","v1_stop":"5400388","functional_annotation":"Probable WRKY transcription factor 4~ WRKY4","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma04_p07220.1","v2_gene_ids":"Ma04_g07220","query_exact_coverage":"1.0","target_exact_coverage":"0.9003831417624522","symmetric_exact_coverage":"0.9475806451612904","sw_score":"2404","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.2896"}

search_text:
GSMUA_Achr4P07230_001 | Panel List genes | 4 | 5396511 | 5400388 | Probable WRKY transcription factor 4~ WRKY4 | True | bidirectional_exact_block_similarity | high | Ma04_p07220.1 | Ma04_g07220 | 1.0 | 0.9003831417624522 | 0.9475806451612904 | 2404 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=0.2896


record_id: DS008_R00058
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr4P07240_001","source_sheet":"Panel List genes","v1_chromosome":"4","v1_start":"5403215","v1_stop":"5403822","functional_annotation":"Hypothetical protein","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma04_p07240.1","v2_gene_ids":"Ma04_g07240","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr4P07240_001 | Panel List genes | 4 | 5403215 | 5403822 | Hypothetical protein | True | exact_protein_sequence | high | Ma04_p07240.1 | Ma04_g07240 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00059
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr4P07250_001","source_sheet":"Panel List genes","v1_chromosome":"4","v1_start":"5405799","v1_stop":"5406327","functional_annotation":"Hypothetical protein","v1_sequence_found":"True","mapping_method":"unmapped","mapping_confidence":"none","v2_protein_ids":"","v2_gene_ids":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity":"","sw_query_coverage":"","sw_target_coverage":"","sw_identity_min_coverage":"","reciprocal_best":"False","mapping_note":"no target shared a sampled 15-aa exact block"}

search_text:
GSMUA_Achr4P07250_001 | Panel List genes | 4 | 5405799 | 5406327 | Hypothetical protein | True | unmapped | none | False | no target shared a sampled 15-aa exact block


record_id: DS008_R00060
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr5P15600_001","source_sheet":"Panel List genes","v1_chromosome":"5","v1_start":"11608632","v1_stop":"11610076","functional_annotation":"Ras-related protein Rab-18","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"moderate","v2_protein_ids":"Ma05_p15510.1","v2_gene_ids":"Ma05_g15510","query_exact_coverage":"0.9675324675324676","target_exact_coverage":"0.7129186602870813","symmetric_exact_coverage":"0.8209366391184573","sw_score":"752","sw_identity":"1.0","sw_query_coverage":"0.922077922077922","sw_target_coverage":"0.6794258373205742","sw_identity_min_coverage":"0.6794258373205742","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.6794"}

search_text:
GSMUA_Achr5P15600_001 | Panel List genes | 5 | 11608632 | 11610076 | Ras-related protein Rab-18 | True | bidirectional_exact_block_similarity | moderate | Ma05_p15510.1 | Ma05_g15510 | 0.9675324675324676 | 0.7129186602870813 | 0.8209366391184573 | 752 | 1.0 | 0.922077922077922 | 0.6794258373205742 | 0.6794258373205742 | True | Smith-Waterman composite top-vs-runner-up margin=0.6794


record_id: DS008_R00061
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr5P15610_001","source_sheet":"Panel List genes","v1_chromosome":"5","v1_start":"11616605","v1_stop":"11617406","functional_annotation":"Thaumatin-like protein 1a","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma05_p15520.1","v2_gene_ids":"Ma05_g15520","query_exact_coverage":"1.0","target_exact_coverage":"0.8765432098765432","symmetric_exact_coverage":"0.9342105263157895","sw_score":"1133","sw_identity":"0.9953051643192489","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"0.9953051643192489","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.6808"}

search_text:
GSMUA_Achr5P15610_001 | Panel List genes | 5 | 11616605 | 11617406 | Thaumatin-like protein 1a | True | bidirectional_exact_block_similarity | high | Ma05_p15520.1 | Ma05_g15520 | 1.0 | 0.8765432098765432 | 0.9342105263157895 | 1133 | 0.9953051643192489 | 1.0 | 1.0 | 0.9953051643192489 | True | Smith-Waterman composite top-vs-runner-up margin=0.6808


record_id: DS008_R00062
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr5P15620_001","source_sheet":"Panel List genes","v1_chromosome":"5","v1_start":"11638620","v1_stop":"11641100","functional_annotation":"Probable pectate lyase 15","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma05_p15530.2","v2_gene_ids":"Ma05_g15530","query_exact_coverage":"0.9886039886039886","target_exact_coverage":"0.7762863534675615","symmetric_exact_coverage":"0.8696741854636592","sw_score":"1792","sw_identity":"1.0","sw_query_coverage":"0.9743589743589743","sw_target_coverage":"0.8769574944071589","sw_identity_min_coverage":"0.8769574944071589","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.0028"}

search_text:
GSMUA_Achr5P15620_001 | Panel List genes | 5 | 11638620 | 11641100 | Probable pectate lyase 15 | True | bidirectional_exact_block_similarity | low | Ma05_p15530.2 | Ma05_g15530 | 0.9886039886039886 | 0.7762863534675615 | 0.8696741854636592 | 1792 | 1.0 | 0.9743589743589743 | 0.8769574944071589 | 0.8769574944071589 | True | Smith-Waterman composite top-vs-runner-up margin=0.0028


record_id: DS008_R00063
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7G18850_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21697762","v1_stop":"21700193","functional_annotation":"MORN repeat domain containing protein","v1_sequence_found":"False","mapping_method":"unmapped","mapping_confidence":"none","v2_protein_ids":"","v2_gene_ids":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity":"","sw_query_coverage":"","sw_target_coverage":"","sw_identity_min_coverage":"","reciprocal_best":"False","mapping_note":"v1 protein absent from Ensembl Plants release 24 protein FASTA"}

search_text:
GSMUA_Achr7G18850_001 | Panel List genes | 7 | 21697762 | 21700193 | MORN repeat domain containing protein | False | unmapped | none | False | v1 protein absent from Ensembl Plants release 24 protein FASTA


record_id: DS008_R00064
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18860_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21708753","v1_stop":"21712586","functional_annotation":"Phosphate carrier protein, mitochondrial","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma07_p20250.1","v2_gene_ids":"Ma07_g20250","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr7P18860_001 | Panel List genes | 7 | 21708753 | 21712586 | Phosphate carrier protein, mitochondrial | True | exact_protein_sequence | high | Ma07_p20250.1 | Ma07_g20250 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00065
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18870_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21721454","v1_stop":"21724816","functional_annotation":"lipase, putative, expressed~ LIP~ complete","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma07_p20260.1","v2_gene_ids":"Ma07_g20260","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr7P18870_001 | Panel List genes | 7 | 21721454 | 21724816 | lipase, putative, expressed~ LIP~ complete | True | exact_protein_sequence | high | Ma07_p20260.1 | Ma07_g20260 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00066
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18880_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21725684","v1_stop":"21732717","functional_annotation":" Zeaxanthin epoxidase, chloroplastic, ZEP","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma07_p20270.1","v2_gene_ids":"Ma07_g20270","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr7P18880_001 | Panel List genes | 7 | 21725684 | 21732717 |  Zeaxanthin epoxidase, chloroplastic, ZEP | True | exact_protein_sequence | high | Ma07_p20270.1 | Ma07_g20270 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00067
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18890_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21732820","v1_stop":"21733240","functional_annotation":"Hypothetical protein~ unknown_gene~ missing_functional_completeness","v1_sequence_found":"True","mapping_method":"unmapped","mapping_confidence":"none","v2_protein_ids":"","v2_gene_ids":"","query_exact_coverage":"","target_exact_coverage":"","symmetric_exact_coverage":"","sw_score":"","sw_identity":"","sw_query_coverage":"","sw_target_coverage":"","sw_identity_min_coverage":"","reciprocal_best":"False","mapping_note":"no target shared a sampled 15-aa exact block"}

search_text:
GSMUA_Achr7P18890_001 | Panel List genes | 7 | 21732820 | 21733240 | Hypothetical protein~ unknown_gene~ missing_functional_completeness | True | unmapped | none | False | no target shared a sampled 15-aa exact block


record_id: DS008_R00068
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18900_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21734212","v1_stop":"21736267","functional_annotation":"Heat stress transcription factor B-1~ HSFB1","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma07_p20280.1","v2_gene_ids":"Ma07_g20280","query_exact_coverage":"0.8858447488584474","target_exact_coverage":"0.6423841059602649","symmetric_exact_coverage":"0.744721689059501","sw_score":"973","sw_identity":"0.9894736842105263","sw_query_coverage":"0.867579908675799","sw_target_coverage":"0.6291390728476821","sw_identity_min_coverage":"0.6225165562913907","reciprocal_best":"False","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.1422"}

search_text:
GSMUA_Achr7P18900_001 | Panel List genes | 7 | 21734212 | 21736267 | Heat stress transcription factor B-1~ HSFB1 | True | bidirectional_exact_block_similarity | low | Ma07_p20280.1 | Ma07_g20280 | 0.8858447488584474 | 0.6423841059602649 | 0.744721689059501 | 973 | 0.9894736842105263 | 0.867579908675799 | 0.6291390728476821 | 0.6225165562913907 | False | Smith-Waterman composite top-vs-runner-up margin=0.1422


record_id: DS008_R00069
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18910_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21739334","v1_stop":"21741414","functional_annotation":"Hypothetical protein","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma07_p20290.1","v2_gene_ids":"Ma07_g20290","query_exact_coverage":"0.9797297297297297","target_exact_coverage":"1.0","symmetric_exact_coverage":"0.9897610921501706","sw_score":"751","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=1.0000"}

search_text:
GSMUA_Achr7P18910_001 | Panel List genes | 7 | 21739334 | 21741414 | Hypothetical protein | True | bidirectional_exact_block_similarity | high | Ma07_p20290.1 | Ma07_g20290 | 0.9797297297297297 | 1.0 | 0.9897610921501706 | 751 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=1.0000


record_id: DS008_R00070
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18920_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21744151","v1_stop":"21746102","functional_annotation":"Alpha-amylase isozyme 3D~ AMY1.3","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma07_p20300.1","v2_gene_ids":"Ma07_g20300","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr7P18920_001 | Panel List genes | 7 | 21744151 | 21746102 | Alpha-amylase isozyme 3D~ AMY1.3 | True | exact_protein_sequence | high | Ma07_p20300.1 | Ma07_g20300 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00071
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18930_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21748033","v1_stop":"21748452","functional_annotation":"AP2 domain containing protein, expressed","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"moderate","v2_protein_ids":"Ma07_p20310.1","v2_gene_ids":"Ma07_g20310","query_exact_coverage":"1.0","target_exact_coverage":"0.5604838709677419","symmetric_exact_coverage":"0.7183462532299741","sw_score":"734","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"0.5604838709677419","sw_identity_min_coverage":"0.5604838709677419","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.1168"}

search_text:
GSMUA_Achr7P18930_001 | Panel List genes | 7 | 21748033 | 21748452 | AP2 domain containing protein, expressed | True | bidirectional_exact_block_similarity | moderate | Ma07_p20310.1 | Ma07_g20310 | 1.0 | 0.5604838709677419 | 0.7183462532299741 | 734 | 1.0 | 1.0 | 0.5604838709677419 | 0.5604838709677419 | True | Smith-Waterman composite top-vs-runner-up margin=0.1168


record_id: DS008_R00072
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18940_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21759430","v1_stop":"21759978","functional_annotation":"Putative uncharacterized protein","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"moderate","v2_protein_ids":"Ma07_p20320.1","v2_gene_ids":"Ma07_g20320","query_exact_coverage":"0.7362637362637363","target_exact_coverage":"1.0","symmetric_exact_coverage":"0.8481012658227848","sw_score":"717","sw_identity":"1.0","sw_query_coverage":"0.7252747252747253","sw_target_coverage":"0.9850746268656716","sw_identity_min_coverage":"0.7252747252747253","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.1480"}

search_text:
GSMUA_Achr7P18940_001 | Panel List genes | 7 | 21759430 | 21759978 | Putative uncharacterized protein | True | bidirectional_exact_block_similarity | moderate | Ma07_p20320.1 | Ma07_g20320 | 0.7362637362637363 | 1.0 | 0.8481012658227848 | 717 | 1.0 | 0.7252747252747253 | 0.9850746268656716 | 0.7252747252747253 | True | Smith-Waterman composite top-vs-runner-up margin=0.1480


record_id: DS008_R00073
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18950_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21762478","v1_stop":"21762996","functional_annotation":"AGAP010609-PA, putative, expressed","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma07_p20330.1","v2_gene_ids":"Ma07_g20330","query_exact_coverage":"1.0","target_exact_coverage":"0.8488372093023255","symmetric_exact_coverage":"0.9182389937106918","sw_score":"710","sw_identity":"0.9931506849315068","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"0.9931506849315068","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.9932"}

search_text:
GSMUA_Achr7P18950_001 | Panel List genes | 7 | 21762478 | 21762996 | AGAP010609-PA, putative, expressed | True | bidirectional_exact_block_similarity | high | Ma07_p20330.1 | Ma07_g20330 | 1.0 | 0.8488372093023255 | 0.9182389937106918 | 710 | 0.9931506849315068 | 1.0 | 1.0 | 0.9931506849315068 | True | Smith-Waterman composite top-vs-runner-up margin=0.9932


record_id: DS008_R00074
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18960_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21764261","v1_stop":"21765235","functional_annotation":"Probable gibberellin receptor GID1L1","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma07_p20340.1","v2_gene_ids":"Ma07_g20340","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr7P18960_001 | Panel List genes | 7 | 21764261 | 21765235 | Probable gibberellin receptor GID1L1 | True | exact_protein_sequence | high | Ma07_p20340.1 | Ma07_g20340 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00075
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18970_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21766565","v1_stop":"21767671","functional_annotation":"DUF1645 domain containing protein","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma07_p20350.1","v2_gene_ids":"Ma07_g20350","query_exact_coverage":"1.0","target_exact_coverage":"0.8369565217391305","symmetric_exact_coverage":"0.9112426035502958","sw_score":"1509","sw_identity":"0.9967532467532467","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"0.9967532467532467","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.1929"}

search_text:
GSMUA_Achr7P18970_001 | Panel List genes | 7 | 21766565 | 21767671 | DUF1645 domain containing protein | True | bidirectional_exact_block_similarity | high | Ma07_p20350.1 | Ma07_g20350 | 1.0 | 0.8369565217391305 | 0.9112426035502958 | 1509 | 0.9967532467532467 | 1.0 | 1.0 | 0.9967532467532467 | True | Smith-Waterman composite top-vs-runner-up margin=0.1929


record_id: DS008_R00076
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18980_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21777684","v1_stop":"21779353","functional_annotation":"Putative Patatin group A-3","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma07_p20380.1","v2_gene_ids":"Ma07_g20380","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr7P18980_001 | Panel List genes | 7 | 21777684 | 21779353 | Putative Patatin group A-3 | True | exact_protein_sequence | high | Ma07_p20380.1 | Ma07_g20380 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00077
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P18990_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21782035","v1_stop":"21794751","functional_annotation":"Putative GPI ethanolamine phosphate transferase 2","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma07_p20390.1","v2_gene_ids":"Ma07_g20390","query_exact_coverage":"0.93359375","target_exact_coverage":"0.9326829268292683","symmetric_exact_coverage":"0.9331381161542216","sw_score":"4755","sw_identity":"0.9947753396029259","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"0.9947753396029259","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.9948"}

search_text:
GSMUA_Achr7P18990_001 | Panel List genes | 7 | 21782035 | 21794751 | Putative GPI ethanolamine phosphate transferase 2 | True | bidirectional_exact_block_similarity | high | Ma07_p20390.1 | Ma07_g20390 | 0.93359375 | 0.9326829268292683 | 0.9331381161542216 | 4755 | 0.9947753396029259 | 1.0 | 1.0 | 0.9947753396029259 | True | Smith-Waterman composite top-vs-runner-up margin=0.9948


record_id: DS008_R00078
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P19000_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21801546","v1_stop":"21802202","functional_annotation":"putative DNA-binding protein ESCAROLA","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma07_p20400.1","v2_gene_ids":"Ma07_g20400","query_exact_coverage":"1.0","target_exact_coverage":"0.5961538461538461","symmetric_exact_coverage":"0.7469879518072289","sw_score":"912","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"0.6987179487179487","sw_identity_min_coverage":"0.6987179487179487","reciprocal_best":"False","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.1008"}

search_text:
GSMUA_Achr7P19000_001 | Panel List genes | 7 | 21801546 | 21802202 | putative DNA-binding protein ESCAROLA | True | bidirectional_exact_block_similarity | low | Ma07_p20400.1 | Ma07_g20400 | 1.0 | 0.5961538461538461 | 0.7469879518072289 | 912 | 1.0 | 1.0 | 0.6987179487179487 | 0.6987179487179487 | False | Smith-Waterman composite top-vs-runner-up margin=0.1008


record_id: DS008_R00079
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P19020_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21823553","v1_stop":"21829213","functional_annotation":"Putative Ubiquitin carboxyl-terminal hydrolase 17","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"low","v2_protein_ids":"Ma07_p20410.1","v2_gene_ids":"Ma07_g20410","query_exact_coverage":"0.9948186528497409","target_exact_coverage":"0.3657142857142857","symmetric_exact_coverage":"0.5348189415041783","sw_score":"1722","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"0.5771428571428572","sw_identity_min_coverage":"0.5771428571428572","reciprocal_best":"False","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.1388"}

search_text:
GSMUA_Achr7P19020_001 | Panel List genes | 7 | 21823553 | 21829213 | Putative Ubiquitin carboxyl-terminal hydrolase 17 | True | bidirectional_exact_block_similarity | low | Ma07_p20410.1 | Ma07_g20410 | 0.9948186528497409 | 0.3657142857142857 | 0.5348189415041783 | 1722 | 1.0 | 1.0 | 0.5771428571428572 | 0.5771428571428572 | False | Smith-Waterman composite top-vs-runner-up margin=0.1388


record_id: DS008_R00080
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P19030_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21840945","v1_stop":"21845159","functional_annotation":"Expressed protein","v1_sequence_found":"True","mapping_method":"exact_protein_sequence","mapping_confidence":"high","v2_protein_ids":"Ma07_p20420.1","v2_gene_ids":"Ma07_g20420","query_exact_coverage":"1.0","target_exact_coverage":"1.0","symmetric_exact_coverage":"1.0","sw_score":"","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"one current gene"}

search_text:
GSMUA_Achr7P19030_001 | Panel List genes | 7 | 21840945 | 21845159 | Expressed protein | True | exact_protein_sequence | high | Ma07_p20420.1 | Ma07_g20420 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | True | one current gene


record_id: DS008_R00081
dataset_id: DS008
record_json:
{"v1_protein_id":"GSMUA_Achr7P19040_001","source_sheet":"Panel List genes","v1_chromosome":"7","v1_start":"21850154","v1_stop":"21852189","functional_annotation":"Cyclin-D3-1","v1_sequence_found":"True","mapping_method":"bidirectional_exact_block_similarity","mapping_confidence":"high","v2_protein_ids":"Ma07_p20430.1","v2_gene_ids":"Ma07_g20430","query_exact_coverage":"0.9608938547486033","target_exact_coverage":"1.0","symmetric_exact_coverage":"0.98005698005698","sw_score":"1763","sw_identity":"1.0","sw_query_coverage":"1.0","sw_target_coverage":"1.0","sw_identity_min_coverage":"1.0","reciprocal_best":"True","mapping_note":"Smith-Waterman composite top-vs-runner-up margin=0.2006"}

search_text:
GSMUA_Achr7P19040_001 | Panel List genes | 7 | 21850154 | 21852189 | Cyclin-D3-1 | True | bidirectional_exact_block_similarity | high | Ma07_p20430.1 | Ma07_g20430 | 0.9608938547486033 | 1.0 | 0.98005698005698 | 1763 | 1.0 | 1.0 | 1.0 | 1.0 | True | Smith-Waterman composite top-vs-runner-up margin=0.2006


